Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0902 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGACATTATCCTTCGCAAGGTCTTCCTCGTCTCTCTCACCGATTCTTCCGATTCCGATTCCAGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAGGGCAAACAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATTATCGATCGTCTTTCCGGCAATTTCTCCTCCGCCGAGCCCCCTTTTCACTACCTAATCGGCTGCTACCGTCGAGCTCACGACGAGACTAAGAAAATCGCTTCCATGAAGGATAGGAATTTGCGCTCTGAGATTGAAATTGCGCTCAAGCAAGCCAAGAAGTTGACCGTTTCGTATTGTAGGATTCATTTGGGCAATCCTGACTTGTTTTCGGGTGGGGATTTGGGTACTAAGTCCAACACTTCGCCTTTGCTCCCTTTTATTTTCTCTGAGGTTGGGACCTCCATGGACGGATTTGGGGCTAGTAGCAGCGTTGGTGGAGCCTTTCAGTGCCCTCCGGGTTTCTTGGAGGAGTTTCTCCGGGATTCGGATTTTGATACATTAGACCCCATATTGAAGGGGCTGTATGAGGATTTAAGGGGTAGTGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCTTTAAGGGCACTTAGGTTTCTCGTCAGTTTCCCTGTTGGGGCTAAATCTCTTGTGAATCACCCATGGTGGATTCCCACTGGTAAATATTCCAATGGGCGTGTCATTGAAATGACTAGCATTTTGGGACCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTATTGTCTTCATTCACTACAATTAAAACTGTTATGAATAACTTATATGATGGCCTTGCGGAAGTTCTTCTGTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTCGAATATCTTGCAGAGGTGATAAATAGAAACTCGTCAAGGGCTCACATACAGGTTGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGTAATCGCTTGGAGTTAAGAGGATTAACTGCTCTACATGCGTCATCGGAAGAAGTTACTGAGTGGATTAATAATGGTACTCAGTTGAAAACTGATAACTCTGGGCAGTTCAGCGACAGTGAAAGTCGCTTGCTGCAATCACAAGAAGCTTCCAGTTCTGGCAGTAATGTTACTACCGGATCTTCTACTGCAAAGGCAAGATCGGGTAGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAGGGGCCTGCTCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTTGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCCTCAACTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAGGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCAGAATATATCAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACAGCAACGTTATTTGAAGGCCACCAACTATCACTCGAGTATCTTGTTAGGAATCTTTTAAAGCTCTATGTGGACATCGAGTTCACTGGTTCTCATACTCAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTCGAATATCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAACGATAGCATATATCTTCTTGACGAAAGCCTTAATAAGATTCTCGAACTTAAAGAACTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAGCGGCGGCCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCTCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACATCAGAGCAAATTACGGCTCCTTTCCTACTCCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAACGAAAATCTCTTAGCTTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAAAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATTTGGCGAGAGGTGATACGATGAATATTTTCCCAGCTGCCATTTCAAAGGATGGTCGATCATACAACGAGCAGTTGTTCAATGCTGCGGCAGTTGTACTTAAACGAATTGGAGAAGATGGAAGGATAATACATGAATTTATTGATCTTGGTAACAAAGCGAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACCCTAGGAGATATTCCGGATGAATTCCTTGACCCGATCCAATACACTCTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACTGATCCTTTCAACCGATCTCATTTGACTTCGGACATGCTGATACCAAACGAAGAATTGAAAGCTAGAATCGAAGAATTTATCAGGTCACAAGAATTGAAGAGGCAACCCGACGGAGGGGTTGCGATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTAA 3123 43.61 MATSKPQRSPEEVEDIILRKVFLVSLTDSSDSDSRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGNFSSAEPPFHYLIGCYRRAHDETKKIASMKDRNLRSEIEIALKQAKKLTVSYCRIHLGNPDLFSGGDLGTKSNTSPLLPFIFSEVGTSMDGFGASSSVGGAFQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTQLKTDNSGQFSDSESRLLQSQEASSSGSNVTTGSSTAKARSGSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDTMNIFPAAISKDGRSYNEQLFNAAAVVLKRIGEDGRIIHEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIEEFIRSQELKRQPDGGVAMQSSKATIQPTSGEMLID 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17725358 17739867 + Lag0028289.1 Lac8g0902 616736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0902 1040 PANTHER UBIQUITINATION FACTOR E4 8 1016 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro)
Lac8g0902 1040 FunFam Ubiquitin conjugation factor e4 a 940 1018 - -
Lac8g0902 1040 Pfam Ubiquitin elongating factor core 259 924 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Lac8g0902 1040 SMART Ubox_2 944 1007 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g0902 1040 MobiDBLite consensus disorder prediction 423 463 - -
Lac8g0902 1040 Coils Coil 519 546 - -
Lac8g0902 1040 CDD RING-Ubox_UBE4A 943 1011 - -
Lac8g0902 1040 MobiDBLite consensus disorder prediction 1015 1040 - -
Lac8g0902 1040 ProSiteProfiles U-box domain profile. 940 1014 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g0902 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 940 1018 IPR013083 -
Lac8g0902 1040 MobiDBLite consensus disorder prediction 423 462 - -
Lac8g0902 1040 SUPERFAMILY RING/U-box 933 1013 - -
Lac8g0902 1040 Pfam U-box domain 941 1011 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0902 K10597 - csv:101211398 1924.83