Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g0987 ATGGAGGTTCTGAGAAGAAGGGTTGGCGGCGGTAGGCTGCTGCAGGCGGTGGTAGTGGCGGCGGCGACGGTGGTGCTGCTGCTGGCGGCGGTGCCGAATGTTTCGGCGACACGGTGGACTGTTGGTGGCAACATGGGGTGGACGACCAATTTTAACTACACTATCTGGGCTCAGGAGAAGCACTTCTATTATGATGACTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAGTTGCAATTCAGATCACCCACTCCACAATTACACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTGACCAGGCCCTATTACTTCATAAGTGGCAAGGGCTTTTGCTTTGGAGGCATGAAGCTCGCTATTCACGTCGAACACCTACCGCCCCCGCCCTCGACCTCGCCCTTGAATGAGAAGAGCAGTTCTCCAAGATCTAGCCACATTGCCCACACCCCATTCCTTTTCACCGCTGTTTTCGCCATCGCTGCTCTACGGGAAGCTTTGGCCCGGATCTGGTAG 552 53.26 MEVLRRRVGGGRLLQAVVVAAATVVLLLAAVPNVSATRWTVGGNMGWTTNFNYTIWAQEKHFYYDDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNYTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSTSPLNEKSSSPRSSHIAHTPFLFTAVFAIAALREALARIW 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19851211 19852590 - Lag0028374.1 Lac8g0987 616821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g0987 183 PANTHER BLUE COPPER PROTEIN 26 142 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lac8g0987 183 Pfam Plastocyanin-like domain 47 129 IPR003245 GO:0009055(InterPro)
Lac8g0987 183 SUPERFAMILY Cupredoxins 36 135 IPR008972 -
Lac8g0987 183 ProSiteProfiles Phytocyanin domain profile. 37 137 IPR003245 GO:0009055(InterPro)
Lac8g0987 183 FunFam Lamin-like protein 35 138 - -
Lac8g0987 183 Gene3D - 35 138 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g0987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1248 Lac-Chr3:10658134 Lac8g0987 Lac-Chr8:19851211 1.80E-26 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac9g2175 . 14 148 Phytocyanin Superfamily AT4G28365 53.3 1.3e-36 150.6
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac6g0590 . 18 137 Phytocyanin Superfamily AT5G57920 52.9 6.3e-37 151.8
Lac6g0590 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.2e-41 166.4
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac9g2763 . 22 237 Phytocyanin Superfamily AT1G08500 54.1 1.1e-55 214.2
Lac3g1248 . 31 146 Phytocyanin Superfamily AT2G27035 56.9 3.7e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38