Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1144 ATGAAGTTCAGAATTGTTGTCTTCTGGATCATACAGATCTCCATCCATGTATTTGGAGTTTTTGCTAAAACCAAGGCCCCTGATGTTTCTGCACTGAATGTGATGTTCACAAGTTTAAATTCACCATCACAACTGAGCGGTTGGACGTCAAATGGGGGTGACCCATGTGGCGATTCTTGGGAAGGGATCAAATGCTCGGGATCATCCGTTACTGAAATAAGTTTATCAGACTATGGACTAACTGGATCAATGGGTTACCAGCTCTCTAATTTGGCTTCTGTCACCTACTTTGATTTGAGCAAGAACGACCTCAGTAGCGATATCCCGTATCAGCTCCCTCCTAATGCCGTTCACATCGATCTTTCGGAGAATAGCTTCACTGGTTCTGTGCCGTATTCAATTTCTCAGATGAGCGGTCTTCAATTTTTAAATCTTCGTCAAAACAAGCTTAGTAACCAATTAAGTGACATGTTTGGCAAGCTTACTAAACTTCAAACGATGGATCTCTCAGAAAACAAACTTTCAGGAAACTTACCTCTAAGTTTTAAGAAGCTTTCAAGCCTCACAGTGTTGCACATACAAAATAATAAATTTACAGGTTCAATTAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACTGGATGGATTCCTGACTCTCTTGAAGGCATAGATAATTTGGAGGTTGTAGGAAATTCTTTTTCGTCCGGACCGGCTCCTCCTCCGCCACCGGGCACAGCTTCTCCGAGCAAAAAGACAGGCAAAACCGAGTCGAACGACAAAGCGTCAAGCACAAGTGGGATGGTAATAGCAGGAATAGCAATGGGAGTGTTGGCATTGATAGCAATCATCATTGCATTGGTGTCAAGAAGGTCACGGCCAGCTACCCATTTCCTGGATGAAGAGCCAAGCCAACACAGATCCTTCGCGCCACTGACATCCCAAGAGTTGGCGAAAGACGTGCACAACAAAGACGGGGAAAGAAAATCGTTCAACTCAGATGCTTCTATCGACGTAAAGTCTCTTCAGAAATCGGTGAGTGCGGTGAGGCCTCCACCGCCGGCTGATCGAGTGCAGTCCTTCAGTGATAATGAGTTCGTAAGCCGTATCAACAACAGAAGAAGCACTTCCGTCCATGCTGTTGCTTTCGCTTTGCCTGATTTGCAAACTGCCACCACTAATTTTGCAACCGGTCGCCTGCTTGGTGAGGGCACCATTGGACGTGTTTATAAGGCCAAGTTTGCTGATGGAAGGGTTTTAGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGGAGAACAGAAGAATTTTCTGAAGTATTAGCAATAATCTCAAAGCTTCACCACACAAACATCACAGAAGTGGTTGGGTTTTGTTCAGAACAGGGACATCACATGCTGATTTATGAGTTTTTCATGAATGGTTCACTTCATGAGTTTCTACACATGTCTGATGACTTTAGCAAACCACTCACATGGAACACTAGAGTCAGAATTGCTTTGGGAACAGCAAGAGCTCTTGAGTACCTTCATGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATTCTGAACTCAATCCTCGCCTCTCAGACTTTGGTTTGGCAACTTTTTATAAGAATAGAACCCAAAACTCTGTACAAGGATATGATGCTCCAGAATGCATAAAGGGTGCAAGTTATACAATGAAGAGTGACATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACCGGACGGATGCCTTATGACTCTACAAAGACAAAGGTGGAACAATGTCTAGTCAGGTGGGCGAGCCCACAGCTGCACGACATAGATGCATTGGACAAAATGGTGGATCCTGCATTGCGAGGGTTATATCCGCCAAAGTCAGTTTCAAGGTTTGCAGATATCATTGCACTTTGCGTTCAATCAGAGCCTGAGTTTCGGCCTCCCATGTCGGAGGTGGTGCAAGCCTTGGTCACTTTGGTTCAACGATCCAGTATGAATATGAGAGATGATCTTGGAGCCTCTCGACGAGGGGATGATTATGACTATTGA 2091 43.76 MKFRIVVFWIIQISIHVFGVFAKTKAPDVSALNVMFTSLNSPSQLSGWTSNGGDPCGDSWEGIKCSGSSVTEISLSDYGLTGSMGYQLSNLASVTYFDLSKNDLSSDIPYQLPPNAVHIDLSENSFTGSVPYSISQMSGLQFLNLRQNKLSNQLSDMFGKLTKLQTMDLSENKLSGNLPLSFKKLSSLTVLHIQNNKFTGSINVLADLPLDDLNVANNKFTGWIPDSLEGIDNLEVVGNSFSSGPAPPPPPGTASPSKKTGKTESNDKASSTSGMVIAGIAMGVLALIAIIIALVSRRSRPATHFLDEEPSQHRSFAPLTSQELAKDVHNKDGERKSFNSDASIDVKSLQKSVSAVRPPPPADRVQSFSDNEFVSRINNRRSTSVHAVAFALPDLQTATTNFATGRLLGEGTIGRVYKAKFADGRVLAVKKIDSSVFQGRRTEEFSEVLAIISKLHHTNITEVVGFCSEQGHHMLIYEFFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDSELNPRLSDFGLATFYKNRTQNSVQGYDAPECIKGASYTMKSDIYSLGVVMLELLTGRMPYDSTKTKVEQCLVRWASPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGASRRGDDYDY 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24508255 24516447 - Lag0028531.1 Lac8g1144 616978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1144 696 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac8g1144 696 SUPERFAMILY Protein kinase-like (PK-like) 382 670 IPR011009 -
Lac8g1144 696 MobiDBLite consensus disorder prediction 256 270 - -
Lac8g1144 696 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515(InterPro)
Lac8g1144 696 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Lac8g1144 696 Gene3D Transferase(Phosphotransferase) domain 1 480 690 - -
Lac8g1144 696 PANTHER LEUCINE RICH REPEAT KINASE 2 268 672 IPR051420 -
Lac8g1144 696 Gene3D Phosphorylase Kinase; domain 1 365 479 - -
Lac8g1144 696 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 367 479 - -
Lac8g1144 696 Pfam Protein kinase domain 404 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1144 696 MobiDBLite consensus disorder prediction 239 270 - -
Lac8g1144 696 Gene3D Ribonuclease Inhibitor 25 257 IPR032675 -
Lac8g1144 696 SUPERFAMILY L domain-like 27 236 - -
Lac8g1144 696 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 480 684 - -
Lac8g1144 696 ProSiteProfiles Protein kinase domain profile. 402 673 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2502 Lac-Chr12:42005360 Lac8g1144 Lac-Chr8:24508255 1.00E-153 dispersed
Lac4g3072 Lac-Chr4:48844313 Lac8g1144 Lac-Chr8:24508255 3.70E-142 dispersed
Lac8g1144 Lac-Chr8:24508255 Lac2g0081 Lac-Chr2:571877 1.40E-61 dispersed
Lac13g1546 Lac-Chr13:16031946 Lac8g1144 Lac-Chr8:24508255 5.80E-33 wgd
Lac2g2138 Lac-Chr2:26456278 Lac8g1144 Lac-Chr8:24508255 1.50E-58 wgd
Lac5g1402 Lac-Chr5:28145867 Lac8g1144 Lac-Chr8:24508255 2.00E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86357 PF00069 Pkinase 1.70E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1144 - - - 0.0