Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1167 ATGAGGACTGGGAACCGAAAGAGGAAGTTAAGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAGAACTTCATTGAAAGATGAAGATCAATCACAAATCGGGATGCCCGGGTTCTCCCGGGTGGTTTTCTGCAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAACAACTCCATCAGGTCTACAAAGTACACACCTATCACTTTTGTGCCCAAGTCCCTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGTATACTAGCCTTCACTCCTCTTGCTCCTTATACTGCTGTCAGTGCAATTATCCCTCTTATTGCAGTCATTGTTGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAAGTTCATCAAGGCAATGGAGTCTTCGATTTTACTCAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTGATTTCATCCTGCTATGAGGATGGAATCTGTTATGTCGAAACGATGAACCTAGATGGCGAAACAAATCTAAAGGTAAAGCAAGCACTGGATGCAACTGTATTTGCAAATGAGGATTCTAACTTCCGTGACTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGGAGCATGGACTTTGAAGAGCAACAGTATCCACTTTCTCCACAAAATCTTCTCCTGAGAGACTCCAAACTCCGAAACACAGAATATATATATGGAGCTGTTGTCTTCACTGGTCATGATTCAAAGGTTATTCAAAATTCTACTGATCCGCCATCTAAGAGAAGCAAGGTTGAGAAGAAGATGGATAAAATCATATATCTATTGTTAAGCATTCTATTCTTGCTGGCATTTATTGGATCTATAGTCTTTGGCGTCATGACTAAAGATGATCTGAAAAATGGGAGGATGAAGAGATGGTATCTCAGACCAGATGATTCTACTATTTTCTTTGATCCCAAAAATGCACCAGCTGCTGCTTTTTTTCACTTTCTGTCAGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGCATCTTCATCAATCAAGACCTTCACATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCAGACAAGACTGGAACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGTATCACTGAAACTGAGAGAGCTATGGAAAGCAGAAATGGTATGCCGATGCTTAATGGCAATGGCAATGGAAATATCTATAAGCACAACGAGGATGCTACAGATACAAATCCCTCTGTCAAAGGTTTTAATTTTAAGGACAGAAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCGACCTGTCATACAGCTATTCCTGATGTGGATGAAGATACAGGCAAGATTTCATATGAAGCTGAATCACCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTATATCAATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCGAAAGGTCGTATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGGAAGAGGATGTCTGTCATAATAAGAGATGAAGAAGGGAAAGTACTATTACTTTGCAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCCAAGAATGCTAGCAAATTTGAAGAGAAAACGAAGGACCATATCAATGAGTATGCTGATGCAGGGCTAAGGACATTGGTACTTGCTTATCGTGAACTTGACGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGTCATTGATTGATAAAGTAACAGATCGCATTGAAAGGGATTTAATTCTTCTCGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAACAGATTATTATAACTCTGGAGACACCAGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTGTCGTCCACAAGATAACTCGGGCAAGGTCTCAGCTCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCGCTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGAGCTTGCAATTGGATGTGCATCTGTTATTTGCTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGCGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAATTGGAATCAGTGGTGCCGAAGGAATGCAGGCAGTCATGTCCAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGACTACTACTTGTGCATGGACATTGGTGTTACAGAAGATTATCATCAATGATATGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACAATTTTCTTATATGAGGCATACACTTCATTCTCTGCACAACCTGCGTATAACGACTGGTTTCTGTCACTCTACAATGTTATGTTCTCCGCGCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAGGACGTGTCTGCAAGATATTGCCTTAAGTTTCCTATGCTGTACCAACAAGGCGTGCAGAACGTCCTCTTCAGCTGGCATCAAGCATTTAACCCCGATGGGAAAACCGTGGGGAGGGATATTCTCGGAGTGACAATGCTTTCGTGTGTTGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACCTTGTTACAACATATTTTCATCTGGGCTTCAATCTTTATCTGGTACCTTTTCCTGATGATATATGGAGCCATCCCTTCCAGCATTTCAACAAATGCATATCGCGTGTTCCTCGAAGCCGTTGCTCCTGCCGGGTCTTATTGGGTTCTGCTAATCTTTGTGGTGATTTCTACTCTCATTCCATTCTTTGTATACTCAGCATTGCAGATGAATTTCTTTCCTATGTACCACGAAAAAATACAGTGGATAAGGCATGATGGTCAGGGTCAGATAGACGATCCCGAGTTTGTCCATATGGTCAGGCAAAGCTCGTTGAGACCGACAACTGTAGGCTTCTCCGCTCGTTTGGCAGCCAAAATAAGAAGAGATAAATCATAG 3513 41.62 MRTGNRKRKLRLSKIYSFACGRTSLKDEDQSQIGMPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPITFVPKSLFEQFRRVANFYFLIAGILAFTPLAPYTAVSAIIPLIAVIVATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDFTQWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATVFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGAVVFTGHDSKVIQNSTDPPSKRSKVEKKMDKIIYLLLSILFLLAFIGSIVFGVMTKDDLKNGRMKRWYLRPDDSTIFFDPKNAPAAAFFHFLSALMLYNYFIPISLYVSIEIVKVLQSIFINQDLHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGITETERAMESRNGMPMLNGNGNGNIYKHNEDATDTNPSVKGFNFKDRRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDEDTGKISYEAESPDEAAFVIAAREIGFEFYQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNASKFEEKTKDHINEYADAGLRTLVLAYRELDEEEYKEFDRKFYEAKNSVSAERESLIDKVTDRIERDLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIITLETPEIQALERTGEKDMITKASKESVVHKITRARSQLTASSGSSEAYALIIDGKSLTYALEDDVKDAFLELAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGIGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTIFLYEAYTSFSAQPAYNDWFLSLYNVMFSALPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWHQAFNPDGKTVGRDILGVTMLSCVVWVVNLQMALSVSYFTLLQHIFIWASIFIWYLFLMIYGAIPSSISTNAYRVFLEAVAPAGSYWVLLIFVVISTLIPFFVYSALQMNFFPMYHEKIQWIRHDGQGQIDDPEFVHMVRQSSLRPTTVGFSARLAAKIRRDKS 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24782303 24788901 - Lag0028554.1 Lac8g1167 617001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1167 1170 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1127 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac8g1167 1170 FunFam Phospholipid-transporting ATPase 118 288 - -
Lac8g1167 1170 CDD P-type_ATPase_APLT_Dnf-like 59 1007 - -
Lac8g1167 1170 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Lac8g1167 1170 Gene3D - 114 288 - -
Lac8g1167 1170 FunFam Phospholipid-transporting ATPase 545 703 - -
Lac8g1167 1170 NCBIfam HAD-IC family P-type ATPase 833 951 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac8g1167 1170 Gene3D - 699 907 IPR023214 -
Lac8g1167 1170 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1009 IPR032630 -
Lac8g1167 1170 Gene3D - 554 677 IPR023299 GO:0000166(InterPro)
Lac8g1167 1170 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1118 IPR023298 -
Lac8g1167 1170 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Lac8g1167 1170 NCBIfam phospholipid-translocating P-type ATPase 57 1008 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac8g1167 1170 FunFam Phospholipid-transporting ATPase 703 907 - -
Lac8g1167 1170 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Lac8g1167 1170 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Lac8g1167 1170 SFLD p-type atpase 408 918 IPR044492 -
Lac8g1167 1170 Pfam Phospholipid-translocating ATPase N-terminal 42 108 IPR032631 -
Lac8g1167 1170 Pfam Cation transport ATPase (P-type) 525 629 - -
Lac8g1167 1170 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 704 IPR023299 GO:0000166(InterPro)
Lac8g1167 1170 SUPERFAMILY HAD-like 421 922 IPR036412 -
Lac8g1167 1170 SFLD C1.7: P-type atpase like 408 918 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0203 Lac-Chr10:1565867 Lac8g1167 Lac-Chr8:24782303 0.00E+00 dispersed
Lac4g2994 Lac-Chr4:48177880 Lac8g1167 Lac-Chr8:24782303 0.00E+00 dispersed
Lac7g2261 Lac-Chr7:37871695 Lac8g1167 Lac-Chr8:24782303 5.10E-21 dispersed
Lac8g1167 Lac-Chr8:24782303 Lac8g2267 Lac-Chr8:40900203 1.90E-180 dispersed
Lac13g0254 Lac-Chr13:1814013 Lac8g1167 Lac-Chr8:24782303 3.10E-253 transposed
Lac13g0439 Lac-Chr13:3104800 Lac8g1167 Lac-Chr8:24782303 0.00E+00 wgd
Lac2g2196 Lac-Chr2:28434690 Lac8g1167 Lac-Chr8:24782303 3.10E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1167 K01530 - csv:101205800 2202.94