Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1253 ATGGTGGTGGAGACTCGAGTGTTGACATGGAGGAGGGGGTTCAAGTCCCTTCAGGCGCTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTGCTCTTGCTCTCAAGCTCGACCATGTCGTCCCTTACTCTTGGTGGTTCGTTGCTTTCTCTCTATTTCTTCTTGAACTTTTGTGTTGTTTGCAGAAAATTAGTGGAACCCATTTCTATTTTCGTGTAATTTGGACTGTTTTGGGTCTAAATTCTGAAGACTTTGTGGTAAGTGTGGAGGGACCTACATATGTGGGCTTGGGTTTGGACTTCGAAAGGAAGCTATTTAGCAGTTATTTCCCTGTCTGGATTGTCTTTTCACCTCTATGGCTTTTTCATCTAATTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGATCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTGCTTCTTTGTATATATTTAGAGTGCAGTAATGTTATAAATTTGAAGACTGTCTTTGTTCCCCTCATGATATTTGAGGTAGCAATTTTGGTCGATAATATCAGGATGTGTAGAGCCTTGCTGCCTGGAGACGAAGAAGACAATGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATTTCCATGGTATTCTTCATCGCTGCAACCCTGTTCACTCTTCTAAAGCTTTGTGGCAATGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTTCTGTATAGCTGAGTGCTTTGCATTTCTTGTTTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTCGTTAGAGAATCAAGTTCCTCTTCGCTGACTATTAGATACCTTGACTGGGATAGAGGTGTGGTGGTTTCCTCTGACGAGGTTCAACCCCAAGTCAGAGTTTGTAATCTGCAGGACATTGGTGGACACATCATGAAGGTTCCTTTTATCATTTTCCAAATCCTGCTTTTTATGCGCTTAGAGGGAACCCCAAGGAGTGCTTCATATATTCCGTGTCTGGTTCTGTTCTCTCCTCTTTTGTTACTGCAAGGAGTGGGTTTTGTATTTGCGGTATATAGGTCAATGGAAAAAATTGTAATTTTACTAGTTGGTGCTCCTACTTCAGTAAGATATCTTGACCTAAGGTTGAAAGCTCGTGAACTTTTAGGGTTCATGCACCATGGATCTAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTTTATTCTGCTGGAACTTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAATGACCAAATCCAATCTCGTTGATGAGATATGGAGATTACAAGCTGCATTGAATCAACAGACAGAAGTTACCAAATTGAGCCGGCAGGAGCACGAAAAGCTTCTAAACGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCCTGTAGGCATCACATTCTTTGCAGCTCTTGTTGTGAGAAATGTAATCGGTGCCCGATCTGTCGGGAATCTATCGAAGAACGGCTGCCTGTAAATGATGTTTAG 1605 42.55 MVVETRVLTWRRGFKSLQALAAHGFLLSFTLALALKLDHVVPYSWWFVAFSLFLLELLCCLQKISGTHFYFRVIWTVLGLNSEDFVVSVEGPTYVGLGLDFERKLFSSYFPVWIVFSPLWLFHLIAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVINLKTVFVPLMIFEVAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLCGNVAALGWWDLFINFCIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEVQPQVRVCNLQDIGGHIMKVPFIIFQILLFMRLEGTPRSASYIPCLVLFSPLLLLQGVGFVFAVYRSMEKIVILLVGAPTSVRYLDLRLKARELLGFMHHGSRLLGWWSIDEGSQEEQAKLYSAGTSGYDTFTPETVKKMTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLNEKILCRVCFDEPIDMVLLPCRHHILCSSCCEKCNRCPICRESIEERLPVNDV 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27364287 27378099 - Lag0028640.1 Lac8g1253 617087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1253 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 531 IPR013083 -
Lac8g1253 534 ProSiteProfiles Zinc finger RING-type profile. 487 522 IPR001841 -
Lac8g1253 534 Pfam Transmembrane Fragile-X-F protein 111 362 IPR019396 -
Lac8g1253 534 SUPERFAMILY RING/U-box 478 528 - -
Lac8g1253 534 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 111 534 - -
Lac8g1253 534 Pfam Zinc finger, C3HC4 type (RING finger) 485 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0494 Lac-Chr3:3781509 Lac8g1253 Lac-Chr8:27364287 1.30E-136 dispersed
Lac7g0788 Lac-Chr7:6301215 Lac8g1253 Lac-Chr8:27364287 1.50E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1253 - - - 0.0