Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g1280 | ATGGACGCAACCTCTGTAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTCCTCTTCAAGTCGTCGCCGTCTCCGTCGCCGGCCGCCGTCGGGATTCTTCACGAGGCCGAGTCCCGCAAGCTTCCATCTTCCCGATTCAAAGGAGTGGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAACGCGTCTGGCTCGGCACATTCAACGAGGAGCACGACGCCGCCAAAGCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGCGACGCCGTCACCAACTTCAAGCCCGACGCCTCCGCCGACGCCGCCGTCGAGGCCGACTTCCTCAAATCCCACTCCAAGCTGGAGATCGTCGACATGCTCCGCAAGCACACCTACAATGACGAGCTCCAGCAGAGCAAGCGCCACCGCGGGGCCGCGCCGGCGCCGACCTCCCTCGAGCAGGGCAGCTCCGATCGCGGGTCGGACTCTTCGCGGGAGGTGCTGTTCGAGAAGAGCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATCCCGAAGCAGCACGCGGAGAAGAACTTCCCGTTGGGGGAGGGCGTGGTTTCGGCAAAAGGAATGCTTTTGAACTTCGAGGATATGGGAGGGAAGGTGTGGCGGTTCCGGTACTCGTACTGGAATAGCAGCCAGAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTCCGGTTCCTCCGGTCGACCGGACCGGATAAGCAGCTTTATATTGATGGAAGACCGGGCGCAGGGGTAAGGGCGGTCCAAGTGGTGAAGCTTTTTGGAGTGAATATATTGGAAGTGCCGGTGGGTTGTTGTGGGAAGAGAGAGACAGAAGGGTTGTTGGATTTACAAACTACTAAGAAGCAAAGAATAATCAAAGCTTTGTAA | 975 | 59.69 | MDATSVDESTASDSTSISPVTPFLFKSSPSPSPAAVGILHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPDASADAAVEADFLKSHSKLEIVDMLRKHTYNDELQQSKRHRGAAPAPTSLEQGSSDRGSDSSREVLFEKSVTPSDVGKLNRLVIPKQHAEKNFPLGEGVVSAKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGPDKQLYIDGRPGAGVRAVQVVKLFGVNILEVPVGCCGKRETEGLLDLQTTKKQRIIKAL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27917084 | 27918058 | + | Lag0028667.1 | Lac8g1280 | 617114 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g1280 | 324 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lac8g1280 | 324 | MobiDBLite | consensus disorder prediction | 140 | 171 | - | - | |
Lac8g1280 | 324 | SUPERFAMILY | DNA-binding pseudobarrel domain | 169 | 268 | IPR015300 | - | |
Lac8g1280 | 324 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g1280 | 324 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 50 | 292 | IPR044800 | GO:0003700(InterPro) | |
Lac8g1280 | 324 | Pfam | B3 DNA binding domain | 174 | 264 | IPR003340 | GO:0003677(InterPro) | |
Lac8g1280 | 324 | SMART | B3_2 | 174 | 278 | IPR003340 | GO:0003677(InterPro) | |
Lac8g1280 | 324 | FunFam | AP2 domain-containing protein RAP2.8 | 50 | 107 | - | - | |
Lac8g1280 | 324 | SMART | rav1_2 | 51 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g1280 | 324 | ProSiteProfiles | B3 DNA-binding domain profile. | 174 | 276 | IPR003340 | GO:0003677(InterPro) | |
Lac8g1280 | 324 | SUPERFAMILY | DNA-binding domain | 50 | 107 | IPR016177 | GO:0003677(InterPro) | |
Lac8g1280 | 324 | CDD | B3_DNA | 173 | 260 | IPR003340 | GO:0003677(InterPro) | |
Lac8g1280 | 324 | Gene3D | AP2/ERF domain | 50 | 107 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g1280 | 324 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lac8g1280 | 324 | Gene3D | - | 162 | 280 | IPR015300 | - | |
Lac8g1280 | 324 | ProSiteProfiles | AP2/ERF domain profile. | 51 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2156 | Lac-Chr5:40128244 | Lac8g1280 | Lac-Chr8:27917084 | 1.40E-34 | dispersed | |
Lac8g1280 | Lac-Chr8:27917084 | Lac9g2590 | Lac-Chr9:44434178 | 1.20E-10 | dispersed | |
Lac13g0460 | Lac-Chr13:3330246 | Lac8g1280 | Lac-Chr8:27917084 | 8.60E-108 | transposed | |
Lac3g0203 | Lac-Chr3:1439955 | Lac8g1280 | Lac-Chr8:27917084 | 2.00E-45 | transposed | |
Lac3g1291 | Lac-Chr3:11145011 | Lac8g1280 | Lac-Chr8:27917084 | 8.90E-44 | transposed | |
Lac11g1733 | Lac-Chr11:31420298 | Lac8g1280 | Lac-Chr8:27917084 | 2.00E-10 | wgd | |
Lac12g1184 | Lac-Chr12:16011459 | Lac8g1280 | Lac-Chr8:27917084 | 1.00E-36 | wgd | |
Lac6g1794 | Lac-Chr6:28856523 | Lac8g1280 | Lac-Chr8:27917084 | 1.60E-06 | wgd | |
Lac8g1280 | Lac-Chr8:27917084 | Lac9g1138 | Lac-Chr9:26659016 | 3.20E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24265 | PF02362 | B3 | 5.20E-27 | CL0405 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g1280 | K09287 | - | csv:101206328 | 471.47 |