Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1280 ATGGACGCAACCTCTGTAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACCCCATTCCTCTTCAAGTCGTCGCCGTCTCCGTCGCCGGCCGCCGTCGGGATTCTTCACGAGGCCGAGTCCCGCAAGCTTCCATCTTCCCGATTCAAAGGAGTGGTCCCTCAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCACCAACGCGTCTGGCTCGGCACATTCAACGAGGAGCACGACGCCGCCAAAGCCTACGACATCGCCGCCCTCCGCTTCCGCGGCCGCGACGCCGTCACCAACTTCAAGCCCGACGCCTCCGCCGACGCCGCCGTCGAGGCCGACTTCCTCAAATCCCACTCCAAGCTGGAGATCGTCGACATGCTCCGCAAGCACACCTACAATGACGAGCTCCAGCAGAGCAAGCGCCACCGCGGGGCCGCGCCGGCGCCGACCTCCCTCGAGCAGGGCAGCTCCGATCGCGGGTCGGACTCTTCGCGGGAGGTGCTGTTCGAGAAGAGCGTGACGCCGAGCGACGTGGGGAAGTTGAACCGGCTGGTGATCCCGAAGCAGCACGCGGAGAAGAACTTCCCGTTGGGGGAGGGCGTGGTTTCGGCAAAAGGAATGCTTTTGAACTTCGAGGATATGGGAGGGAAGGTGTGGCGGTTCCGGTACTCGTACTGGAATAGCAGCCAGAGCTATGTGTTGACCAAGGGATGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTCCGGTTCCTCCGGTCGACCGGACCGGATAAGCAGCTTTATATTGATGGAAGACCGGGCGCAGGGGTAAGGGCGGTCCAAGTGGTGAAGCTTTTTGGAGTGAATATATTGGAAGTGCCGGTGGGTTGTTGTGGGAAGAGAGAGACAGAAGGGTTGTTGGATTTACAAACTACTAAGAAGCAAAGAATAATCAAAGCTTTGTAA 975 59.69 MDATSVDESTASDSTSISPVTPFLFKSSPSPSPAAVGILHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPDASADAAVEADFLKSHSKLEIVDMLRKHTYNDELQQSKRHRGAAPAPTSLEQGSSDRGSDSSREVLFEKSVTPSDVGKLNRLVIPKQHAEKNFPLGEGVVSAKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGPDKQLYIDGRPGAGVRAVQVVKLFGVNILEVPVGCCGKRETEGLLDLQTTKKQRIIKAL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27917084 27918058 + Lag0028667.1 Lac8g1280 617114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1280 324 MobiDBLite consensus disorder prediction 1 31 - -
Lac8g1280 324 MobiDBLite consensus disorder prediction 140 171 - -
Lac8g1280 324 SUPERFAMILY DNA-binding pseudobarrel domain 169 268 IPR015300 -
Lac8g1280 324 CDD AP2 50 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1280 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 292 IPR044800 GO:0003700(InterPro)
Lac8g1280 324 Pfam B3 DNA binding domain 174 264 IPR003340 GO:0003677(InterPro)
Lac8g1280 324 SMART B3_2 174 278 IPR003340 GO:0003677(InterPro)
Lac8g1280 324 FunFam AP2 domain-containing protein RAP2.8 50 107 - -
Lac8g1280 324 SMART rav1_2 51 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1280 324 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677(InterPro)
Lac8g1280 324 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677(InterPro)
Lac8g1280 324 CDD B3_DNA 173 260 IPR003340 GO:0003677(InterPro)
Lac8g1280 324 Gene3D AP2/ERF domain 50 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1280 324 MobiDBLite consensus disorder prediction 1 28 - -
Lac8g1280 324 Gene3D - 162 280 IPR015300 -
Lac8g1280 324 ProSiteProfiles AP2/ERF domain profile. 51 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2156 Lac-Chr5:40128244 Lac8g1280 Lac-Chr8:27917084 1.40E-34 dispersed
Lac8g1280 Lac-Chr8:27917084 Lac9g2590 Lac-Chr9:44434178 1.20E-10 dispersed
Lac13g0460 Lac-Chr13:3330246 Lac8g1280 Lac-Chr8:27917084 8.60E-108 transposed
Lac3g0203 Lac-Chr3:1439955 Lac8g1280 Lac-Chr8:27917084 2.00E-45 transposed
Lac3g1291 Lac-Chr3:11145011 Lac8g1280 Lac-Chr8:27917084 8.90E-44 transposed
Lac11g1733 Lac-Chr11:31420298 Lac8g1280 Lac-Chr8:27917084 2.00E-10 wgd
Lac12g1184 Lac-Chr12:16011459 Lac8g1280 Lac-Chr8:27917084 1.00E-36 wgd
Lac6g1794 Lac-Chr6:28856523 Lac8g1280 Lac-Chr8:27917084 1.60E-06 wgd
Lac8g1280 Lac-Chr8:27917084 Lac9g1138 Lac-Chr9:26659016 3.20E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24265 PF02362 B3 5.20E-27 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1280 K09287 - csv:101206328 471.47