Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1295 ATGCAGAGTTGTAACTTCACTTGCATATCATCAAGCGAGAGCGCGTGTTTGGAGGCTGATGAAGAAGGAGAAGACTCCATTTTCCTTTCCCTTTGCCCTCCAGGCCAACGCCACACAGTTTCTTCCAAACAAAACCAACACCATCATCCCATTTACCCTAATTCTTCTTCTCTTCAAAACCCTAATGTCTTTCATCGCCAAGATGCTGCCGTCACCGTCGCAATGCATATCGGCCCCCCTGCCGTCTCCTCCTCCGCCGCCGAATCCAACGACGTCGCCGCCGCCCGCCCGCTCGACGGCCAGTTCTGGATCCCTACGCCGGCCCAAATCCTCGTTGGTCCCACCCAGTTCTCCTGCTCTGTCTGCAGTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAGTCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAGGCTTCCATGCTATTGCTGTGCAGAGGGCTGCAAAAACAACATAGAACATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTGCAGACCCATTACAAGAGAAAGCATGGGGCAAAGCCCTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTGAGAGGGGATTGGAGGACACACGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGGTCCCTTAAGGACCATGTTCGAGCCTTTGGGGATGGCCATGCACCTCACACTGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGACGACAACGATGATCATCACGAACATGTAATAAATGGAGCTCAAGGATGGTCTATTTTTCATTGA 870 49.54 MQSCNFTCISSSESACLEADEEGEDSIFLSLCPPGQRHTVSSKQNQHHHPIYPNSSSLQNPNVFHRQDAAVTVAMHIGPPAVSSSAAESNDVAAARPLDGQFWIPTPAQILVGPTQFSCSVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGSKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHHEHVINGAQGWSIFH 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28218300 28219662 + Lag0028682.1 Lac8g1295 617129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1295 289 FunFam zinc finger protein WIP2-like 116 139 - -
Lac8g1295 289 SUPERFAMILY beta-beta-alpha zinc fingers 185 222 IPR036236 -
Lac8g1295 289 Gene3D Classic Zinc Finger 116 139 - -
Lac8g1295 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Lac8g1295 289 Gene3D Classic Zinc Finger 160 249 - -
Lac8g1295 289 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Lac8g1295 289 MobiDBLite consensus disorder prediction 38 59 - -
Lac8g1295 289 FunFam Zinc finger protein WIP2 171 253 - -
Lac8g1295 289 SUPERFAMILY beta-beta-alpha zinc fingers 110 139 IPR036236 -
Lac8g1295 289 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 201 225 - -
Lac8g1295 289 PANTHER ZINC FINGER PROTEIN WIP2 16 276 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac8g1295 289 SMART c2h2final6 117 139 IPR013087 -
Lac8g1295 289 SMART c2h2final6 165 197 IPR013087 -
Lac8g1295 289 SMART c2h2final6 202 222 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2662 Lac-Chr4:45626190 Lac8g1295 Lac-Chr8:28218300 7.20E-84 dispersed
Lac8g1295 Lac-Chr8:28218300 Lac9g2839 Lac-Chr9:46386195 5.80E-86 dispersed
Lac10g1892 Lac-Chr10:24450457 Lac8g1295 Lac-Chr8:28218300 5.00E-49 transposed
Lac1g1026 Lac-Chr1:26933773 Lac8g1295 Lac-Chr8:28218300 3.60E-45 wgd
Lac10g2530 Lac-Chr10:39175847 Lac8g1295 Lac-Chr8:28218300 1.40E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24266 PF00096 zf-C2H2 0.012 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1295 - - - 0.0