Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1398 ATGCAGAGCTTTGAAAACCCAGAACAGCTCTATGCCCATTCTTCTTCTTCTTCCATCTTTCTCCGGGGAGACGACAGTGGGCGAATCCATACGCGGTTTCTTCCGGATATTGAGGAGCTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCACGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAACGCAGCTTTTCCAATCCACCTACCGTACGCGAGCGCGGATGTGGGTTCAATAGGAGCAGGGTATTTAGACACGGGACAGCAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGACGGCGGCGGTGACGGTGGCGGCTGCCGCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAGGGAGCTGCTCATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCCAAAGCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTACAGCAGCTGGAAAATAGTCGACAGAGGCTTACACAGCTAGAGCAGGAGCTTCATCGAGCACGTCAACAGGGCATTTTTGTGGCTTCTGGGGCAGGAGACCATTGTTTATCAATGGCAGGAAATGGTGCCTTGGCATTTGATCTCGACTATTCGCGGTGGCTCGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCTAACTCTCAGATGGGCGACGACGAATTGCGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAGAGCGTAGGCGCCAAGGCCGACGTATTCCACATCCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGATCGTCCGAACTTCTAAAGATAGTTGGGAACCATTTGGAGCCTTTAACGGATCAGCAGTTGATGGGCATATGCAATCTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCACAAGGGATTGAAGCTCTGCAACAATCCCTCGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAATTCGGGGAATGTTGCCGATTACATGGGCCAAATGGCGATTGCGATGAGCAAGCTAACGACGCTCGAGAACTTTCTCCACCAGGCTGATCTTCTGAGGCAGCAAACGCTCCAACAGATGCATCGAATATTAACTACTCGACAAGCTGCACGAGCGCTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCAAGAGATTGA 1398 50.21 MQSFENPEQLYAHSSSSSIFLRGDDSGRIHTRFLPDIEELQQSAAAIAAFHHDDAVDLSPSSVFSLKSTHNAAFPIHLPYASADVGSIGAGYLDTGQQLMRLKRLAPPQTAAVTVAAAASLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKAKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLTQLEQELHRARQQGIFVASGAGDHCLSMAGNGALAFDLDYSRWLDEHQRLINDLRASANSQMGDDELRFLVDGVMAHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGNHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPANSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30681784 30684395 - Lag0028785.1 Lac8g1398 617232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1398 465 PANTHER TRANSCRIPTION FACTOR TGA9 136 465 - -
Lac8g1398 465 CDD bZIP_HBP1b-like 180 232 - -
Lac8g1398 465 SMART brlzneu 176 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1398 465 Coils Coil 199 226 - -
Lac8g1398 465 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1398 465 ProSiteProfiles DOG1 domain profile. 246 462 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac8g1398 465 SUPERFAMILY Leucine zipper domain 180 223 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1398 465 Pfam Seed dormancy control 264 337 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac8g1398 465 Gene3D - 179 228 - -
Lac8g1398 465 FunFam BZIP family transcription factor 179 228 - -
Lac8g1398 465 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1398 465 Pfam bZIP transcription factor 179 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0834 Lac-Chr6:7189251 Lac8g1398 Lac-Chr8:30681784 1.10E-117 dispersed
Lac8g1398 Lac-Chr8:30681784 Lac9g2703 Lac-Chr9:45307956 2.50E-86 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24269 PF14144 DOG1 3.90E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1398 K14431 - csv:101210308 822.387