Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1421 ATGATTTCCTCCCACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCTCTCTCTCCGATTTCGCCCACTCTCTCGAGCAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTAACCCATGCCATTGATTGTTGCAGGCATCAGCCGTCGGAGACGACGACGGAGAATCGTCACTCGGAGTGTTCGGAGCAGACTTCCAGCGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTATCAGAAATGGGGTCTCTGATTTTGAACGCCGACAGTCTCCTCAGACTCAAGAGGAGGAGGAGGAGGAGAAGAATAGCGACTCTGATCCAAACGATTTGAATTTGGGTCCGGCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCCTCCCTGAATCAGGACCCGCCGGAGAAGTCCGCCGTTGTTGAGGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAATCCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCCGCTCCGCCCCCGGCTCCGGCGACGGCCACGAGCTCGACGGCGGAGACGGGGTCTGGCGGAAGCGGCCGACGGGAAGAGAAGGACGCGCAAAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGCGGTTCCCATGTGGCGACGCCGAAGCAAATTAGAGAATTAATGAAGGTGGATGGTCTAACCAACGACGAAGTGAAAAGTCATTTACAGAAGTATCGTCTGCACACGAGACGCCCAAGTCCCACGATCCACAACAACGACAGCGCCCAGCCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCAGCCGTGGCCGCCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCCACCACCAACGGAATCTATGCACCGGTGGTTACAGCAGCGCCGCCGCAGCCATTACCCAGTACAGTCCAAAAGCCCAAACCCAGGCCTAAGGTTGCTTCCGCCGCCGCCGCCGAATGTAATTCTCCGACTACGTCTTCGTCCACTCATACGTCTTCAGTTTCACCTGCTTCTTGA 1131 57.47 MISSHKMQEIASKMGFSLSDFAHSLEQERRKVLMFQRELPLCLELVTHAIDCCRHQPSETTTENRHSECSEQTSSDMGPVLEEFIPIIRNGVSDFERRQSPQTQEEEEEEKNSDSDPNDLNLGPADWLRSAQLWNQTSDPPSLNQDPPEKSAVVEVKRNGGAFRPFQKEKSGGGGGGTSSSSAPPPAPATATSSTAETGSGGSGRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDSAQPPQFLVVGGIWVPAAEYAAVAATTSSGEAVSAATTNGIYAPVVTAAPPQPLPSTVQKPKPRPKVASAAAAECNSPTTSSSTHTSSVSPAS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31047508 31050300 - Lag0028808.1 Lac8g1421 617255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1421 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Lac8g1421 376 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 271 IPR006447 GO:0003677(InterPro)
Lac8g1421 376 MobiDBLite consensus disorder prediction 161 220 - -
Lac8g1421 376 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Lac8g1421 376 MobiDBLite consensus disorder prediction 58 79 - -
Lac8g1421 376 MobiDBLite consensus disorder prediction 92 124 - -
Lac8g1421 376 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Lac8g1421 376 MobiDBLite consensus disorder prediction 331 376 - -
Lac8g1421 376 MobiDBLite consensus disorder prediction 173 201 - -
Lac8g1421 376 Gene3D - 215 273 - -
Lac8g1421 376 FunFam Myb family transcription factor 215 273 - -
Lac8g1421 376 MobiDBLite consensus disorder prediction 356 376 - -
Lac8g1421 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 340 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1421 376 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1421 Lac-Chr8:31047508 Lac9g1599 Lac-Chr9:35193762 2.40E-31 dispersed
Lac1g1554 Lac-Chr1:36834410 Lac8g1421 Lac-Chr8:31047508 5.80E-12 wgd
Lac10g2310 Lac-Chr10:35371390 Lac8g1421 Lac-Chr8:31047508 5.50E-12 wgd
Lac13g0461 Lac-Chr13:3340474 Lac8g1421 Lac-Chr8:31047508 7.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24270 PF00249 Myb_DNA-binding 1.70E-06 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1421 - - - 0.0