Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g1421 | ATGATTTCCTCCCACAAAATGCAAGAAATTGCATCCAAAATGGGCTTCTCTCTCTCCGATTTCGCCCACTCTCTCGAGCAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGGAGCTCGTAACCCATGCCATTGATTGTTGCAGGCATCAGCCGTCGGAGACGACGACGGAGAATCGTCACTCGGAGTGTTCGGAGCAGACTTCCAGCGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTATCAGAAATGGGGTCTCTGATTTTGAACGCCGACAGTCTCCTCAGACTCAAGAGGAGGAGGAGGAGGAGAAGAATAGCGACTCTGATCCAAACGATTTGAATTTGGGTCCGGCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCCTCCCTGAATCAGGACCCGCCGGAGAAGTCCGCCGTTGTTGAGGTCAAGAGAAATGGCGGTGCTTTCCGGCCGTTTCAGAAGGAGAAATCCGGTGGCGGAGGTGGAGGGACGTCGTCGTCTTCCGCTCCGCCCCCGGCTCCGGCGACGGCCACGAGCTCGACGGCGGAGACGGGGTCTGGCGGAAGCGGCCGACGGGAAGAGAAGGACGCGCAAAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGCGGTTCCCATGTGGCGACGCCGAAGCAAATTAGAGAATTAATGAAGGTGGATGGTCTAACCAACGACGAAGTGAAAAGTCATTTACAGAAGTATCGTCTGCACACGAGACGCCCAAGTCCCACGATCCACAACAACGACAGCGCCCAGCCGCCGCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGGCCGAGTACGCAGCCGTGGCCGCCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCCACCACCAACGGAATCTATGCACCGGTGGTTACAGCAGCGCCGCCGCAGCCATTACCCAGTACAGTCCAAAAGCCCAAACCCAGGCCTAAGGTTGCTTCCGCCGCCGCCGCCGAATGTAATTCTCCGACTACGTCTTCGTCCACTCATACGTCTTCAGTTTCACCTGCTTCTTGA | 1131 | 57.47 | MISSHKMQEIASKMGFSLSDFAHSLEQERRKVLMFQRELPLCLELVTHAIDCCRHQPSETTTENRHSECSEQTSSDMGPVLEEFIPIIRNGVSDFERRQSPQTQEEEEEEKNSDSDPNDLNLGPADWLRSAQLWNQTSDPPSLNQDPPEKSAVVEVKRNGGAFRPFQKEKSGGGGGGTSSSSAPPPAPATATSSTAETGSGGSGRREEKDAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNDSAQPPQFLVVGGIWVPAAEYAAVAATTSSGEAVSAATTNGIYAPVVTAAPPQPLPSTVQKPKPRPKVASAAAAECNSPTTSSSTHTSSVSPAS | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 31047508 | 31050300 | - | Lag0028808.1 | Lac8g1421 | 617255 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g1421 | 376 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 213 | 273 | IPR017930 | - | |
Lac8g1421 | 376 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 216 | 271 | IPR006447 | GO:0003677(InterPro) | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 161 | 220 | - | - | |
Lac8g1421 | 376 | SUPERFAMILY | Homeodomain-like | 214 | 274 | IPR009057 | - | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 58 | 79 | - | - | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 92 | 124 | - | - | |
Lac8g1421 | 376 | Pfam | Myb-like DNA-binding domain | 218 | 269 | IPR001005 | - | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 331 | 376 | - | - | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 173 | 201 | - | - | |
Lac8g1421 | 376 | Gene3D | - | 215 | 273 | - | - | |
Lac8g1421 | 376 | FunFam | Myb family transcription factor | 215 | 273 | - | - | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 356 | 376 | - | - | |
Lac8g1421 | 376 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 12 | 340 | IPR044787 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g1421 | 376 | MobiDBLite | consensus disorder prediction | 202 | 220 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac8g1421 | Lac-Chr8:31047508 | Lac9g1599 | Lac-Chr9:35193762 | 2.40E-31 | dispersed | |
Lac1g1554 | Lac-Chr1:36834410 | Lac8g1421 | Lac-Chr8:31047508 | 5.80E-12 | wgd | |
Lac10g2310 | Lac-Chr10:35371390 | Lac8g1421 | Lac-Chr8:31047508 | 5.50E-12 | wgd | |
Lac13g0461 | Lac-Chr13:3340474 | Lac8g1421 | Lac-Chr8:31047508 | 7.40E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24270 | PF00249 | Myb_DNA-binding | 1.70E-06 | CL0123 | Lac | TF |
Pathway information
