Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1443 ATGTATTGGAAGCAGAGATCAAGAGAAAATTGGTTAAAGTGGGGTGACCGGAATACCAAGTGGTTCCACCAGAAGGCTTATGCAAGGAAAAAGCGTAATGAGATTCGTGGGGTGGAGGATGAAGCTTGGCAAGCGGCTAACGCTGAGATTCATAAAGGTGACCCTTTATCTCCATATGTATTCCTGCTTTGTTCAGAATGTTTATCTTCAATGTTAGCTAGTGTCAGGAATAGTGATATCACTAGAGTGTCCGTAGCACAATCGGCACCTAAGATGTCACATCTCTTCTTCGCTGATGATAGCCTCATTTTTCTGAAAGCAAAGGCCGCTGAGTTTGGATGTTTCAGAGTCATCATGGCAAATTATGAACGTGCATCGGGCCAATGTATTGACCTGGACAAATCAATGGTATGTTTCTCTAAAAATGTCCCTAGAGATACAAGATCTTATCTTGGTTCTATTATGCAAATGAGGGTGGTAGACAATTTGGGTTCTTATTTGGGGTTGCCATCGTCTTTCCATAGAAGGAAGAGTAAAGATTTTAAATGTGTGATGGATAAGGTGCGGTCGACATTGCAAGGATGGAAGCAAAGATACTTCTCAGCAGGGGGCAATGAGGTCCTCATTAAGAGCGTTGTCCAAGCAATCCCTTCGTATCCTATGGGATGTTTTCAACTACCAAAGGGACTTTTATCCAAAATTACTGCTTTGTGTGCTAAGTTTTGGTGGGGTTCGACGGATCAGAAACATCGCGTCCATTGGTGTAAGTGGAGGGATTTATATAAACCCAAGGAAATTGGTGGGTTAAATTTCAGGGATTTGGAACTTTTTAACCAAGCTTTGCTGGCAAAACAGATTCTGAAAGGACGGTACTTCCCGACATCGACGCTTTTGGAGGTGGGTGCTCGCTCAAACGCTTCCGTTTTTTGGAAGGGGTTTACATGGGGTTTAGATCTTTTAAAAGCAGGGCCTAAGATGAACATTGGGGATGGATGGTCTATTAAGTTGGTCCTTGATCCTTGGATCCCTCAGCCTCACACATTCAAGGTTTTAGGATACAAGGGATCTGAGGTCCATATGATGGCATCTGAATATGTTTCCCCCTTTGGTCAGTGGGAAGTGGACAAGCTCCGTCAAATACTATGGGAAGATGATGTGCAGAAGATTCTACATATTCCAATTAGTAAACATGCTCCTAATAGATGGATTTGGCATTATGATAAGCATGGTGTGTATTCAGTTAAGAGTAGGTATAAATTGGGCTTGCTAATGAAATGCGATGCCTCGACATCATGCATTGATTTGGAGCGTAAGTGGTGGTCCAGACTGTGGAAAATTCATCTCCCAATGAAAATAAAACACTTTGTATGGCCTTCATTTCAGAACTGTATTCCGACTGTTGTCAACTTGTGGAGACACCATGTTCCAGTCGATGGGATTTGTTCTTTGTGTTTGGAGGTGCCTGAATCCACTGACCATGCACTTTTTCATTGTCCAAGGGCGAAGGAAGTGTGGACAAGAATGAATATTGGGGAAGAGGTTGGCTGGAATGTTGAGATAAATAACGCTCTTCAAAACAAGCCGATTCCCCCAGTAAACATCAGATGTGAATGGATCCATGAATATCTGTTTGATTTTAAAGGGGTAAATCAGCGACGAGGTCGGAAAGTTCAATCGGTTCAGGTGATAAACCAAATGATTTCTCAAGGGGAAGATTTGATAATGCATGTTGATGCAGCCTGTGATTTGGAAAATAGGTGTTGTGGTATTAGAGTGGTGCTACGCAATCGGATGGGTCAGCTGAAGTTAGCATTGCATCAGGGGTCGTCTACATTTACTAGCTCTTTGTGTGCAGAGGCGGTGGCGATCCTTGAAGGTATGAAGATTGCGCGTCAAAATGGTGTCCAAAGATTGACCATTTTCTCTGATTCCCTAGCATTGATATCAATTCTTCTGCGGACGGAGTGGTGTGTGGTGGATTGTGCCACTGTCATTTGGGATATCCAACTTTTGCGCGATTCGTTTCATAAGATTAAATTTTATCTTGTTAATTGTGATTTTAATTCATTAGCTCATGCATTAGCCCGTGCGGGGTTGTATTCTACACCACGTGTGTGGTATTCAAACCATCCAGATTGGATGTCGCTGTGGAGAAGAAAACTCAATGGAGTTTGCGGGATGCGTAGAAGGCTCGTTGGAGCGGCGGGAGAAGCTCGTCGGTACAGTGTAGGAGGGGTATATCTTCTGATTGAGAGGGCTGATTTTTCAATCGACGCATTTGAAAGTCGGCGCCTTCCCTTTATCTCTCACTCCGCCGGCGACGCTAGGCCCTTCGACCACCTCTCTTCCGAAGCGACGAAACAGATCCCAGCGACGACGTTCTTTCCTTTGGCAGCGAACTCGGACTCGCAACGGGCACCGAGCAGCCGAGCAGCCGAGCAGATACGGCGGCGCATCTATTCTGAATCCGGCTGGTCTTACTCGTATACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACGAAGAATAAAAACATCAGAAAACGGACGGTTGATGAAGATGAAGAGGAGGACTCTAAAACTGAGACTTCGTTCCTGGCTAATCAGAAAAAAGCTCCCAAGACTGAGAGCAAGCTTTATTTCTCTTCTGGACCCTCAAAAAGTTCCTTGTCTAATGAGTCAAATGCGGAGCCTGAAAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCAACTGCAACTCTGGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCTATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGAAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACACACAGTTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGGGATTACAAATCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGTTCTGATGATGGGGATGAGGATGCTGCAGAACAGAGTGATGAAGATGATGAAGATGCCCTTCCCTTCGCTTGTTTTATTTGCCGTGAGCCATTTGTGGACCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAACACTGTGCGCTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATACGGAAAAAGATGGCACAAAGTAAATAA 3459 44.23 MYWKQRSRENWLKWGDRNTKWFHQKAYARKKRNEIRGVEDEAWQAANAEIHKGDPLSPYVFLLCSECLSSMLASVRNSDITRVSVAQSAPKMSHLFFADDSLIFLKAKAAEFGCFRVIMANYERASGQCIDLDKSMVCFSKNVPRDTRSYLGSIMQMRVVDNLGSYLGLPSSFHRRKSKDFKCVMDKVRSTLQGWKQRYFSAGGNEVLIKSVVQAIPSYPMGCFQLPKGLLSKITALCAKFWWGSTDQKHRVHWCKWRDLYKPKEIGGLNFRDLELFNQALLAKQILKGRYFPTSTLLEVGARSNASVFWKGFTWGLDLLKAGPKMNIGDGWSIKLVLDPWIPQPHTFKVLGYKGSEVHMMASEYVSPFGQWEVDKLRQILWEDDVQKILHIPISKHAPNRWIWHYDKHGVYSVKSRYKLGLLMKCDASTSCIDLERKWWSRLWKIHLPMKIKHFVWPSFQNCIPTVVNLWRHHVPVDGICSLCLEVPESTDHALFHCPRAKEVWTRMNIGEEVGWNVEINNALQNKPIPPVNIRCEWIHEYLFDFKGVNQRRGRKVQSVQVINQMISQGEDLIMHVDAACDLENRCCGIRVVLRNRMGQLKLALHQGSSTFTSSLCAEAVAILEGMKIARQNGVQRLTIFSDSLALISILLRTEWCVVDCATVIWDIQLLRDSFHKIKFYLVNCDFNSLAHALARAGLYSTPRVWYSNHPDWMSLWRRKLNGVCGMRRRLVGAAGEARRYSVGGVYLLIERADFSIDAFESRRLPFISHSAGDARPFDHLSSEATKQIPATTFFPLAANSDSQRAPSSRAAEQIRRRIYSESGWSYSYTMTDTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKTETSFLANQKKAPKTESKLYFSSGPSKSSLSNESNAEPEKPIFQFESSKEIQVHHDSRATATLETETEFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTVSSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDDGDEDAAEQSDEDDEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31544380 31551307 + Lag0028830.1 Lac8g1443 617277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1443 1152 SUPERFAMILY RING/U-box 1092 1136 - -
Lac8g1443 1152 MobiDBLite consensus disorder prediction 875 908 - -
Lac8g1443 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1091 1150 IPR013083 -
Lac8g1443 1152 CDD RING-HC_RNF113A_B 1086 1139 - -
Lac8g1443 1152 MobiDBLite consensus disorder prediction 1064 1083 - -
Lac8g1443 1152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1016 1041 IPR000571 GO:0046872(InterPro)
Lac8g1443 1152 ProSiteProfiles Zinc finger C3H1-type profile. 1015 1043 IPR000571 GO:0046872(InterPro)
Lac8g1443 1152 MobiDBLite consensus disorder prediction 919 936 - -
Lac8g1443 1152 SUPERFAMILY CCCH zinc finger 1014 1046 IPR036855 GO:0046872(InterPro)
Lac8g1443 1152 Gene3D - 1013 1047 - -
Lac8g1443 1152 Pfam Zinc finger, C3HC4 type (RING finger) 1092 1134 - -
Lac8g1443 1152 SMART ring_2 1093 1130 IPR001841 -
Lac8g1443 1152 ProSiteProfiles Zinc finger RING-type profile. 1093 1131 IPR001841 -
Lac8g1443 1152 PANTHER ZINC FINGER PROTEIN 183 842 1151 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Lac8g1443 1152 FunFam RING finger protein 113A 1091 1150 - -
Lac8g1443 1152 Pfam Reverse transcriptase-like 577 697 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lac8g1443 1152 SMART c3hfinal6 1015 1042 IPR000571 GO:0046872(InterPro)
Lac8g1443 1152 MobiDBLite consensus disorder prediction 857 936 - -
Lac8g1443 1152 ProSitePatterns Zinc finger RING-type signature. 1108 1117 IPR017907 -
Lac8g1443 1152 Gene3D - 572 702 IPR036397 GO:0003676(InterPro)
Lac8g1443 1152 Pfam zinc-binding in reverse transcriptase 412 505 IPR026960 -
Lac8g1443 1152 SUPERFAMILY Ribonuclease H-like 572 701 IPR012337 -
Lac8g1443 1152 CDD RNase_H_like 577 696 IPR044730 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1561 Lac-Chr10:16122591 Lac8g1443 Lac-Chr8:31544380 2.40E-51 dispersed
Lac10g2949 Lac-Chr10:44082793 Lac8g1443 Lac-Chr8:31544380 4.80E-48 dispersed
Lac11g0680 Lac-Chr11:7041960 Lac8g1443 Lac-Chr8:31544380 2.90E-110 dispersed
Lac12g1501 Lac-Chr12:27656575 Lac8g1443 Lac-Chr8:31544380 2.30E-73 dispersed
Lac13g0271 Lac-Chr13:1948916 Lac8g1443 Lac-Chr8:31544380 5.90E-134 dispersed
Lac13g0767 Lac-Chr13:6101970 Lac8g1443 Lac-Chr8:31544380 2.60E-34 dispersed
Lac1g0773 Lac-Chr1:19395526 Lac8g1443 Lac-Chr8:31544380 1.90E-200 dispersed
Lac3g1444 Lac-Chr3:13105151 Lac8g1443 Lac-Chr8:31544380 1.70E-120 dispersed
Lac4g1840 Lac-Chr4:37566964 Lac8g1443 Lac-Chr8:31544380 2.60E-27 dispersed
Lac5g0321 Lac-Chr5:3295949 Lac8g1443 Lac-Chr8:31544380 3.60E-86 dispersed
Lac6g2225 Lac-Chr6:38904729 Lac8g1443 Lac-Chr8:31544380 4.40E-111 dispersed
Lac6g2730 Lac-Chr6:45049594 Lac8g1443 Lac-Chr8:31544380 6.90E-45 dispersed
Lac8g1443 Lac-Chr8:31544380 Lac9g2892 Lac-Chr9:46803696 6.10E-195 dispersed
Lac12g0551 Lac-Chr12:5918839 Lac8g1443 Lac-Chr8:31544380 2.20E-31 transposed
Lac13g0223 Lac-Chr13:1609030 Lac8g1443 Lac-Chr8:31544380 2.20E-22 transposed
Lac5g1494 Lac-Chr5:29891490 Lac8g1443 Lac-Chr8:31544380 3.90E-11 transposed
Lac5g2676 Lac-Chr5:45190613 Lac8g1443 Lac-Chr8:31544380 3.50E-24 transposed
Lac1g0433 Lac-Chr1:9486761 Lac8g1443 Lac-Chr8:31544380 1.10E-104 wgd
Lac1g0819 Lac-Chr1:20978815 Lac8g1443 Lac-Chr8:31544380 1.30E-25 wgd
Lac1g0022 Lac-Chr1:327951 Lac8g1443 Lac-Chr8:31544380 2.30E-32 wgd
Lac10g2326 Lac-Chr10:35642553 Lac8g1443 Lac-Chr8:31544380 2.00E-85 wgd
Lac10g2265 Lac-Chr10:34347358 Lac8g1443 Lac-Chr8:31544380 1.40E-39 wgd
Lac10g1972 Lac-Chr10:26883670 Lac8g1443 Lac-Chr8:31544380 5.30E-19 wgd
Lac11g0921 Lac-Chr11:10004374 Lac8g1443 Lac-Chr8:31544380 7.30E-121 wgd
Lac12g2051 Lac-Chr12:37619018 Lac8g1443 Lac-Chr8:31544380 5.50E-93 wgd
Lac12g1214 Lac-Chr12:17010754 Lac8g1443 Lac-Chr8:31544380 9.40E-07 wgd
Lac2g2431 Lac-Chr2:35211293 Lac8g1443 Lac-Chr8:31544380 1.20E-104 wgd
Lac3g2392 Lac-Chr3:34179733 Lac8g1443 Lac-Chr8:31544380 3.80E-36 wgd
Lac3g1497 Lac-Chr3:13741678 Lac8g1443 Lac-Chr8:31544380 2.60E-66 wgd
Lac3g1898 Lac-Chr3:21315594 Lac8g1443 Lac-Chr8:31544380 6.10E-28 wgd
Lac5g1326 Lac-Chr5:26248149 Lac8g1443 Lac-Chr8:31544380 5.00E-49 wgd
Lac5g1476 Lac-Chr5:29530202 Lac8g1443 Lac-Chr8:31544380 2.90E-11 wgd
Lac5g1207 Lac-Chr5:21686565 Lac8g1443 Lac-Chr8:31544380 2.40E-20 wgd
Lac5g1233 Lac-Chr5:22818904 Lac8g1443 Lac-Chr8:31544380 9.10E-78 wgd
Lac6g2256 Lac-Chr6:39618550 Lac8g1443 Lac-Chr8:31544380 1.80E-73 wgd
Lac6g1511 Lac-Chr6:19306133 Lac8g1443 Lac-Chr8:31544380 3.10E-34 wgd
Lac6g1653 Lac-Chr6:24000516 Lac8g1443 Lac-Chr8:31544380 4.80E-68 wgd
Lac7g2542 Lac-Chr7:43534202 Lac8g1443 Lac-Chr8:31544380 4.70E-102 wgd
Lac8g0730 Lac-Chr8:13512009 Lac8g1443 Lac-Chr8:31544380 9.70E-22 wgd
Lac8g1259 Lac-Chr8:27437394 Lac8g1443 Lac-Chr8:31544380 7.70E-97 wgd
Lac8g1443 Lac-Chr8:31544380 Lac8g1526 Lac-Chr8:32839236 3.70E-14 wgd
Lac8g1443 Lac-Chr8:31544380 Lac9g0592 Lac-Chr9:11529874 3.00E-08 wgd
Lac8g1443 Lac-Chr8:31544380 Lac9g1545 Lac-Chr9:34314675 4.70E-94 wgd
Lac8g1443 Lac-Chr8:31544380 Lac9g1472 Lac-Chr9:33091423 4.70E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24272 PF13456 RVT_3 9.10E-17 CL0219 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1443 K13127 - csv:101221334 604.749