Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1447 ATGTGCAGATCGGCGGTTGGGCTTTCTTTTGGGCTGGGCGGTGTACCATCTCCCAATCAACGGTTGGATATTCTACCTACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCTTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACCGATTGCTTTAGTTCTAGTAGATCCGTTATAACTGAGGAACAACATAAGCTCACCAAGGTGGAACACAAAACCAAGGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATGCGAGAAGTATATCAGGGGTTTGCTCAAACTTTGTGTCTTCATCATTCTCTGAATATACTTTTAGGTCTGAGGCTCTAACATGTGTGTCCTCAAATGAAGTGGTAGCGGATTGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGATTGAATGTTGCTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATGCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGAATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGCTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCCGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCGGTTAGATCTCTATTTGCTAACGCAAGAGCCACCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATAGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCTGAACGAGAGGAGATATTTCGTATCCATTTGTGTAAAGTTCCTTGCAGCTCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTTTAGACACATGAAGCCATCTGAAACTGAACCTTATCAAGAATTATCGTCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGGAGCTAATGCCTCGGAAGTGGTCATCGTCGCACGTGGAGGGTGCCATCGGCGTGATTCTGCTTGTGGATTTGATGGGTTTTGCGTAAGCTTGCTGGCAGCTCATGGGTTCTCACGAATGGAAGCCAGACGGAGGAGAAAGAGGGCGCCACCACCACCACTGTTAGCCTTGCTGGAGATGTATGGTGGCCGGGGGAGAAGGAAAGGGGGTGGTGGTGGTGTGCGGCTATTAACGCTAGGGAGAGGGAGAGAAGAAAAAGGTGACTAA 1554 44.85 MCRSAVGLSFGLGGVPSPNQRLDILPTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSSRSVITEEQHKLTKVEHKTKVDDMILEPVLSKDARSISGVCSNFVSSSFSEYTFRSEALTCVSSNEVVADCEDIFNSSEIKCRLNVAFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKMQLMEAVEWPQKHQDEFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFANARATPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSSDVSTRKLASLTQGFRHMKPSETEPYQELSSRFQRLVCSSSQGANASEVVIVARGGCHRRDSACGFDGFCVSLLAAHGFSRMEARRRRKRAPPPPLLALLEMYGGRGRRKGGGGGVRLLTLGRGREEKGD 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31624482 31627985 + Lag0028834.1 Lac8g1447 617281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1447 517 ProSitePatterns AAA-protein family signature. 337 355 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac8g1447 517 Pfam ATPase family associated with various cellular activities (AAA) 236 366 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac8g1447 517 FunFam calmodulin-interacting protein 111 isoform X1 193 367 - -
Lac8g1447 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 95 IPR027417 -
Lac8g1447 517 MobiDBLite consensus disorder prediction 497 517 - -
Lac8g1447 517 Pfam AAA+ lid domain 39 82 IPR041569 -
Lac8g1447 517 Gene3D - 14 130 - -
Lac8g1447 517 SMART AAA_5 232 369 IPR003593 GO:0016887(InterPro)
Lac8g1447 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 401 IPR027417 -
Lac8g1447 517 CDD RecA-like_CDC48_r2-like 207 365 - -
Lac8g1447 517 PANTHER AAA-FAMILY ATPASE 14 403 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Lac8g1447 517 Gene3D - 368 403 - -
Lac8g1447 517 Gene3D - 193 367 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1792 Lac-Chr4:36918313 Lac8g1447 Lac-Chr8:31624482 1.20E-221 dispersed
Lac8g0345 Lac-Chr8:4185921 Lac8g1447 Lac-Chr8:31624482 1.70E-58 dispersed
Lac8g1447 Lac-Chr8:31624482 Lac9g2457 Lac-Chr9:43485223 2.70E-41 dispersed
Lac8g1446 Lac-Chr8:31605884 Lac8g1447 Lac-Chr8:31624482 6.20E-25 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1447 - - - 0.0