Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1479 ATGAGTGGCGGCGGCAGTGGCACTTCTCGAAGCACCAGGGATTTGATCTGCCACGCCGGTGCCGGTGCTGCTGCAGGTACTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGCCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTTAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATACAGATGGGGATGGTGGTCAACTCTCATTTGGGACAAATATGGTTGTTGCTGCTGGCGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACCAGACTCCAAACCCAAGGAATGAGGCCTGGCGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAGGAAGGAATCCGTGGCCTTTACAGTGGTATCATCCCTTCATTGGTTGGGATAAGTCATGTTGCAATTCAATTTCCCGCATACGAAAAGCTCAAATCATATATGGCAAAAAGAGATAACACAACCGTTGAAAAGCTAAGTCCAGGAAATTTAGCTATTGCTTCCTCATTGTCGAAAATTACGGCCTCGGTAACAACTTACCCACATGAGGTAATTCGTTCCCGGCTGCAAGAGCAAGGCCAAGCCAGAAACATTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTCCAAAAGGAAGGTCTCCCCGGTTTTTATAGGGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCAGCTGTAATAACCTTCACCAGCTATGAGATGATACATAGGTTCCTACTGCAAGTTATACCTCCAGGCGAGGAGAAATATTCCGAAACTCATCCGAATTCAGCTAGCCACGTGAAGCCCCAAAAGGTGAACAGAGACAACTCGAAGGAAGATAGCGATTCCGGCATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAACATCTAGACACTGA 1107 46.43 MSGGGSGTSRSTRDLICHAGAGAAAGTIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHTDGDGGQLSFGTNMVVAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGIIPSLVGISHVAIQFPAYEKLKSYMAKRDNTTVEKLSPGNLAIASSLSKITASVTTYPHEVIRSRLQEQGQARNIAPQYSGVMDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQVIPPGEEKYSETHPNSASHVKPQKVNRDNSKEDSDSGIQQSQSQPSKQTRIPLGNKEQLTSRH 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32088887 32093025 + Lag0028866.1 Lac8g1479 617313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1479 368 MobiDBLite consensus disorder prediction 340 368 - -
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 174 192 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085(InterPro)
Lac8g1479 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 302 IPR018108 -
Lac8g1479 368 Pfam Mitochondrial carrier protein 111 203 IPR018108 -
Lac8g1479 368 Pfam Mitochondrial carrier protein 211 304 IPR018108 -
Lac8g1479 368 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Lac8g1479 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Lac8g1479 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Lac8g1479 368 Gene3D Mitochondrial carrier domain 5 107 IPR023395 -
Lac8g1479 368 Gene3D Mitochondrial carrier domain 108 307 IPR023395 -
Lac8g1479 368 SUPERFAMILY Mitochondrial carrier 13 298 IPR023395 -
Lac8g1479 368 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 317 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Lac8g1479 368 MobiDBLite consensus disorder prediction 313 368 - -
Lac8g1479 368 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 14 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2489 Lac-Chr4:44220013 Lac8g1479 Lac-Chr8:32088887 5.40E-114 dispersed
Lac4g2872 Lac-Chr4:47263774 Lac8g1479 Lac-Chr8:32088887 7.40E-15 dispersed
Lac4g3001 Lac-Chr4:48277704 Lac8g1479 Lac-Chr8:32088887 7.80E-13 dispersed
Lac8g1479 Lac-Chr8:32088887 Lac7g0180 Lac-Chr7:1446825 2.40E-07 dispersed
Lac8g1479 Lac-Chr8:32088887 Lac13g1025 Lac-Chr13:8646925 1.80E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1479 K15115 - csv:101216902 629.402