Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1508 ATGTCGTCGTCGTCGCAGCTTAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCCCCAATCTTTGCTCCCAAGCAATCCGTTCCGGTCTCCCTTCCATTGACTCTCTATGGCGACTCGACTCACGCGGACTCAATCTCCACTTCAAAATCGATAAGCAACCACCTCTACCAAACACGCGTGGTTCAAGATCACCAGGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTCAGAAGTATTAACCACGAGCTTAGCAAACACTTGAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAGGGATTCTGTGGACTCAGTATCGCAGACAAGGGAGCAAGCAGTTCGGCATGGGAAGATGTTTGCGATGAGAGTCCGACGAGTGTAATGGAGGGTGGAAGAGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTTAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCAACTCGTCCCAGAACTGCGAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAGGAGGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAGGAAACGGGCAGCTGCCCCTACGGAGACCACTGCCAATTCGCCCACGGAATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCACTCACTGACCAGGAAAGGCTCATGGGGCCACTCAAGCCCACCTGCAGGACCACCCCCAAGCTCGACAGAGCAAACTATGTAAAGGCTAAAAGCACTTTGTTGGGGGATGATGATGTTGATTGTTTCTATGGACAAGTTGTTCATTCTCTATGCTTTTTAGGATGA 1089 52.62 MSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSISTSKSISNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFCGLSIADKGASSSAWEDVCDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGTSQGGKVRASTRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTTPKLDRANYVKAKSTLLGDDDVDCFYGQVVHSLCFLG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32462548 32465584 + Lag0028895.1 Lac8g1508 617342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1508 362 SMART c3hfinal6 244 271 IPR000571 GO:0046872(InterPro)
Lac8g1508 362 SMART c3hfinal6 282 309 IPR000571 GO:0046872(InterPro)
Lac8g1508 362 FunFam zinc finger CCCH domain-containing protein 15-like 238 277 - -
Lac8g1508 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 270 IPR000571 GO:0046872(InterPro)
Lac8g1508 362 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872(InterPro)
Lac8g1508 362 FunFam Zinc finger protein 36, C3H1 type-like 1 278 314 - -
Lac8g1508 362 ProSiteProfiles Zinc finger C3H1-type profile. 244 272 IPR000571 GO:0046872(InterPro)
Lac8g1508 362 Coils Coil 83 103 - -
Lac8g1508 362 SUPERFAMILY CCCH zinc finger 241 276 IPR036855 GO:0046872(InterPro)
Lac8g1508 362 Gene3D - 238 277 - -
Lac8g1508 362 Gene3D - 278 314 - -
Lac8g1508 362 PANTHER CCCH ZINC FINGER/TIS11-RELATED 50 316 IPR045877 GO:0003729(InterPro)
Lac8g1508 362 SUPERFAMILY CCCH zinc finger 278 312 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1508 Lac-Chr8:32462548 Lac8g2993 Lac-Chr8:46785724 2.80E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24275 PF00642 zf-CCCH 5.60E-12 CL0537 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1508 K18753 - csv:101203274 614.764