Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1538 ATGGCGGTTTTACCTATCAACTCATCCAACTTGGATCTCTCCATTTCCGTGCCCGGCTTTGCTTCTTCCTCGTCGCGTCCTTCCTTCGCGAGAGAATTGGACATTAACCGGGTACCGGCGGTGGGTGCGGAGGAGGAAGAGTGGGCGGTGGTGCCGAGCACGGAGGAGGAAGAAGAGAGCTGCATTAATGTATGTCAGCCGAGGAAGAAGCTTCGTCTGTCGAAAGATCAGTCTCGTCTTCTTGAAGAGAGCTTCAGGCTCAACCATACATTAAACCCTAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATGTGCCTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCGCCGCCCGCCCTCGTCTCACCCCATGACCGACGGCCACCCCTCCCAGCGTCTACGATAACCATGTGTCCCCGGTGCGAGCGCGTGACTGCAGCCATCGGGACCGCCGCCACCACCGCCGCCATCACAATGCCATCAAAGGTGGTTCTGTCAGCCCTCAAGTTTCGGCAGCCGTCGGGAGCTTGCTGA 666 56.16 MAVLPINSSNLDLSISVPGFASSSSRPSFARELDINRVPAVGAEEEEWAVVPSTEEEEESCINVCQPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECAYLKRWFGSLTEQNRRLRRELEELRAIKVAPPALVSPHDRRPPLPASTITMCPRCERVTAAIGTAATTAAITMPSKVVLSALKFRQPSGAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32998377 33001025 + Lag0028925.1 Lac8g1538 617372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1538 221 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac8g1538 221 CDD homeodomain 67 125 IPR001356 GO:0003677(InterPro)
Lac8g1538 221 SMART halz 124 167 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g1538 221 Coils Coil 137 157 - -
Lac8g1538 221 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Lac8g1538 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 195 IPR050762 -
Lac8g1538 221 FunFam Homeobox-leucine zipper protein 18 53 129 - -
Lac8g1538 221 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
Lac8g1538 221 Pfam Homeodomain 68 122 IPR001356 GO:0003677(InterPro)
Lac8g1538 221 Pfam Homeobox associated leucine zipper 124 156 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g1538 221 Gene3D - 74 120 - -
Lac8g1538 221 SMART HOX_1 66 128 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1501 Lac-Chr13:15180740 Lac8g1538 Lac-Chr8:32998377 3.50E-31 dispersed
Lac7g0087 Lac-Chr7:738420 Lac8g1538 Lac-Chr8:32998377 6.70E-34 dispersed
Lac8g1538 Lac-Chr8:32998377 Lac8g2671 Lac-Chr8:44187497 5.70E-09 dispersed
Lac8g1538 Lac-Chr8:32998377 Lac1g2717 Lac-Chr1:48403763 2.10E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24276 PF00046 Homeodomain 9.60E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1538 K09338 - csv:101206325 289.656