Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1555 ATGAGCAGCGAGGTCGTCGGCGACGGCCGGCGGCGTGCCTTAGCGCTGCAACTGCTTGACCTCGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATCGCCGGCTCCGGAGACGTCATGAAAAAGGACTGCACCGATCTCATCCGTCGGATCGCGCTCCTGATTCATCTGGCGGAGGAGATCACTAACTTCCGCGGCGGCGGCAGCGACAATTTTGAGGAATTGAATGAGTCTGGTTCTTCTTCTTCTTCATCTTTGGATTGCCTTTCGGAAGTGGTGGGAGCAATTCAGGCGGCGAAGCGCCTTCTGTACGCCGCTTTGACTTTCTGTGGAATCGACGATGACGCTTCTGCCTCTGCGACTTCGACTATTTGGACACTGAAATTTCTGTATGTTATCATTTTAATAAAGGACGGAGCTTCCAAAAAATTGGTTCTACAATTCCAGTACGTGACCACCAGATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTCTCAGATGAAGTTCAAGAACAGGTTGATTTGGTTAGAGCTCAGTTGAGGAGAGCATCAAACAAGTATGAGTCCATGTCTAAACCTGCAGACAAGAAGCTCCAAGCTAGAACTTCTGTGAAATGGAAGGTCAACAATGAAGTCAAGAGCATGTCTAGTGTTGATGATTCAGATACAGAGTCTCAGCATCGTCCCGAGAACCGGGGTGATCGAACCGGTTTCGATTCGGAGGAGCTGAGGAACTCGAATTCGTGTTTGGATGAGTGTTCGAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGAAATTGAAATTCCTGAGAACTTCTTATGCCCCATTTCCTTTGAGTTGATGATAGATCCCGTCATCATCTCGACCGGGCAGACATATGAGAGGTCCAACATACAGAACTGGATAGACAGAGGAAATACAACATGTCCAAAAACTCAGGAGCAGCTCCAAGCGCTGAACCTCACTCCAAATTTTCTTATGAAGAAACTCATCTATGAATGGTGTCAAGAACACAATGTCAAGCTAGAGGAAGGATTAACCAACAGGAAGCTTAAGAAGTACAGATCATTTGAAGACGGTTTCAGAAGGACTCCGCCAATCAAAACTCTCGTTCGACACCTTTCTTTCGGGTCGGTCCAGGAGCAGAAGGCGGCCGTGACCGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCACAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATGTTCTAATACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGACCAAAACAAGAGACTTGTTATGCTTTCTGGTGCAGTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCCACGATATACAGCTTGTCGTTAGCCGATGAGAACAAGGCGATAATCGGGGCATCGGGCGTGATCCCGAACCTGTTGGAAATCGTCGAGATCGGGAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTCTCAGGGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGCTCCTTGGTTGATGAAGCTCTGTATATAATGTCGGTTCTTTGCGGCCATCCAGAGGCGAAGGCTGCGATGGCGAATGCGAATACGCTGCTCGCTTTGATCGACGTTGTGAAGACGGGGTCATCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTTGGAGAAGCTGACATGGTTAACCAGGATTGGCGCCGCGATGCCGTTGATGAAACTCGCCGAGAACGGCACCGGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAGCAACTAAGGAAATCATGA 1965 48.24 MSSEVVGDGRRRALALQLLDLVRDFVLMSGRSIAGSGDVMKKDCTDLIRRIALLIHLAEEITNFRGGGSDNFEELNESGSSSSSSLDCLSEVVGAIQAAKRLLYAALTFCGIDDDASASATSTIWTLKFLYVIILIKDGASKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSKPADKKLQARTSVKWKVNNEVKSMSSVDDSDTESQHRPENRGDRTGFDSEELRNSNSCLDECSSVVHSDMEDVLASKSQDEIEIPENFLCPISFELMIDPVIISTGQTYERSNIQNWIDRGNTTCPKTQEQLQALNLTPNFLMKKLIYEWCQEHNVKLEEGLTNRKLKKYRSFEDGFRRTPPIKTLVRHLSFGSVQEQKAAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDVLIQENAISCILNLSLHDQNKRLVMLSGAVSYISQVLKFGSMEGRECAAATIYSLSLADENKAIIGASGVIPNLLEIVEIGSPRGQKDAAGALLNLCMYQGNKGRALRAGIVKPLLKMLSDSNGSLVDEALYIMSVLCGHPEAKAAMANANTLLALIDVVKTGSSRSKENAAAVLLALCKGDLEKLTWLTRIGAAMPLMKLAENGTGRARRKAASLLEQLRKS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33211156 33215432 - Lag0028942.1 Lac8g1555 617389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1555 654 SUPERFAMILY RING/U-box 272 352 - -
Lac8g1555 654 MobiDBLite consensus disorder prediction 221 245 - -
Lac8g1555 654 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g1555 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 362 IPR013083 -
Lac8g1555 654 Gene3D - 495 654 IPR011989 -
Lac8g1555 654 Coils Coil 170 190 - -
Lac8g1555 654 Pfam U-box domain 279 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g1555 654 SUPERFAMILY ARM repeat 372 651 IPR016024 -
Lac8g1555 654 FunFam RING-type E3 ubiquitin transferase 279 351 - -
Lac8g1555 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 CDD RING-Ubox_PUB 280 332 IPR045210 -
Lac8g1555 654 PANTHER U BOX DOMAIN-CONTAINING 38 653 - -
Lac8g1555 654 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g1555 654 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Lac8g1555 654 MobiDBLite consensus disorder prediction 217 247 - -
Lac8g1555 654 FunFam RING-type E3 ubiquitin transferase 365 654 - -
Lac8g1555 654 Gene3D - 377 494 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1555 Lac-Chr8:33211156 Lac9g1894 Lac-Chr9:38710060 2.40E-39 dispersed
Lac13g1443 Lac-Chr13:14259800 Lac8g1555 Lac-Chr8:33211156 3.40E-97 transposed
Lac6g1867 Lac-Chr6:31564155 Lac8g1555 Lac-Chr8:33211156 3.30E-32 transposed
Lac9g1195 Lac-Chr9:27883910 Lac8g1555 Lac-Chr8:33211156 6.30E-24 transposed
Lac3g1540 Lac-Chr3:14375134 Lac8g1555 Lac-Chr8:33211156 9.80E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1555 - - - 0.0