Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1599 ATGGGTGATGTGAAGGACAAGGTCAAGGGTTTCATGAAACGGTTTAATAATTCGTTGTCCTCATCTTCTTCTTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCGGCGTCGGCCAGTTCTTTGCCTACCCGCCCATCGGAAAATCCCATCTCAAAGCCGAAGCTGGTTAATCCACCTTCAGATTCCCCGGTAAATTCAAAGCCGCCGGTTGCGAATTCAATTGGCACAGGCCAAAACAGGTCAGAACTGTCGAATAAGTCGAACCCAGATCGTAAACCGGCTGATGGATTTGACCCATTTGACTCGTTTATTACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCAGAGCACGTAGATAGCTGTGTCAATGATAATACAGCCAAAGGACCAGCGGATCTGCCTATGAACGATGCAGAATCTCAGAGTGAATTGGAGGCTTGCGTTGGCACTTTCTTATCAGGGAAGCCATCACAAGGTTCATTGGAAATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGCCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGCTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAAGAAATTAACGTATTAAGTAAGGTAATAGATTCGGTTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGGCAGCACTGCATCTATGGGTTCAACTCAGGTTGATGAACTGATTAAACCAAAGAAGATAGACAGACAGATTCGGGTATTCTTTGCTGTCCCAGAAAACGTGGCAGCAAACATTGAGCTACCAGATTCCTTCTATAAGCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCGGAATCTCAACTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCCAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAGTTTCCCGATGGTGTGGTACTTCAAGGTGTTTTTTCTCCTCGCGAAACGACAAGTGCTCTGTATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGTTTGGAATTCGAATTGATACATCCTGTCGGTGTTAGACGGCGTACAATCGCTCATTTTCCTGCAGAAGGAGAGAAAGCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGGTCTTGTCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCTCAAGTTTAA 1440 44.17 MGDVKDKVKGFMKRFNNSLSSSSSSSFKGQGRVLGSSSSASASSLPTRPSENPISKPKLVNPPSDSPVNSKPPVANSIGTGQNRSELSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSEHVDSCVNDNTAKGPADLPMNDAESQSELEACVGTFLSGKPSQGSLEIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAAGGVELLEFVGFKLQEEDGEMWATMEVPTEEEINVLSKVIDSVDRPKLDEQQKKGSTASMGSTQVDELIKPKKIDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPRETTSALYEFVSTALKEPGLEFELIHPVGVRRRTIAHFPAEGEKAKTLDDEELVPSGLVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33801780 33807200 + Lag0028986.1 Lac8g1599 617433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1599 479 MobiDBLite consensus disorder prediction 15 105 - -
Lac8g1599 479 SMART ubx_3 356 445 IPR001012 GO:0005515(InterPro)
Lac8g1599 479 SMART c2hc_5 122 146 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Lac8g1599 479 MobiDBLite consensus disorder prediction 15 51 - -
Lac8g1599 479 SMART PGNneu 183 250 - -
Lac8g1599 479 FunFam UBX domain-containing protein 6 353 444 - -
Lac8g1599 479 Gene3D Classic Zinc Finger 119 151 - -
Lac8g1599 479 CDD PUB 170 266 - -
Lac8g1599 479 ProSiteProfiles UBX domain profile. 359 443 IPR001012 GO:0005515(InterPro)
Lac8g1599 479 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Lac8g1599 479 Gene3D - 177 266 - -
Lac8g1599 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 154 IPR013087 -
Lac8g1599 479 Pfam PUB domain 182 256 IPR018997 -
Lac8g1599 479 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 470 - GO:0050832(PANTHER)
Lac8g1599 479 MobiDBLite consensus disorder prediction 57 88 - -
Lac8g1599 479 Pfam UBX domain 360 439 IPR001012 GO:0005515(InterPro)
Lac8g1599 479 Gene3D - 353 445 - -
Lac8g1599 479 SUPERFAMILY PUG domain-like 181 244 IPR036339 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2388 Lac-Chr6:41569942 Lac8g1599 Lac-Chr8:33801780 4.00E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24278 PF00789 UBX 1.90E-07 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1599 K14011 - csv:101209321 807.364