Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g1599 | ATGGGTGATGTGAAGGACAAGGTCAAGGGTTTCATGAAACGGTTTAATAATTCGTTGTCCTCATCTTCTTCTTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCGGCGTCGGCCAGTTCTTTGCCTACCCGCCCATCGGAAAATCCCATCTCAAAGCCGAAGCTGGTTAATCCACCTTCAGATTCCCCGGTAAATTCAAAGCCGCCGGTTGCGAATTCAATTGGCACAGGCCAAAACAGGTCAGAACTGTCGAATAAGTCGAACCCAGATCGTAAACCGGCTGATGGATTTGACCCATTTGACTCGTTTATTACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCAGAGCACGTAGATAGCTGTGTCAATGATAATACAGCCAAAGGACCAGCGGATCTGCCTATGAACGATGCAGAATCTCAGAGTGAATTGGAGGCTTGCGTTGGCACTTTCTTATCAGGGAAGCCATCACAAGGTTCATTGGAAATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGCCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGCTGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAAGAAATTAACGTATTAAGTAAGGTAATAGATTCGGTTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGGCAGCACTGCATCTATGGGTTCAACTCAGGTTGATGAACTGATTAAACCAAAGAAGATAGACAGACAGATTCGGGTATTCTTTGCTGTCCCAGAAAACGTGGCAGCAAACATTGAGCTACCAGATTCCTTCTATAAGCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCGGAATCTCAACTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCCAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAGTTTCCCGATGGTGTGGTACTTCAAGGTGTTTTTTCTCCTCGCGAAACGACAAGTGCTCTGTATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGTTTGGAATTCGAATTGATACATCCTGTCGGTGTTAGACGGCGTACAATCGCTCATTTTCCTGCAGAAGGAGAGAAAGCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGGTCTTGTCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCTCAAGTTTAA | 1440 | 44.17 | MGDVKDKVKGFMKRFNNSLSSSSSSSFKGQGRVLGSSSSASASSLPTRPSENPISKPKLVNPPSDSPVNSKPPVANSIGTGQNRSELSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSEHVDSCVNDNTAKGPADLPMNDAESQSELEACVGTFLSGKPSQGSLEIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAAGGVELLEFVGFKLQEEDGEMWATMEVPTEEEINVLSKVIDSVDRPKLDEQQKKGSTASMGSTQVDELIKPKKIDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPRETTSALYEFVSTALKEPGLEFELIHPVGVRRRTIAHFPAEGEKAKTLDDEELVPSGLVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 33801780 | 33807200 | + | Lag0028986.1 | Lac8g1599 | 617433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g1599 | 479 | MobiDBLite | consensus disorder prediction | 15 | 105 | - | - | |
Lac8g1599 | 479 | SMART | ubx_3 | 356 | 445 | IPR001012 | GO:0005515(InterPro) | |
Lac8g1599 | 479 | SMART | c2hc_5 | 122 | 146 | IPR006642 | GO:0003677(InterPro)|GO:0006281(InterPro) | |
Lac8g1599 | 479 | MobiDBLite | consensus disorder prediction | 15 | 51 | - | - | |
Lac8g1599 | 479 | SMART | PGNneu | 183 | 250 | - | - | |
Lac8g1599 | 479 | FunFam | UBX domain-containing protein 6 | 353 | 444 | - | - | |
Lac8g1599 | 479 | Gene3D | Classic Zinc Finger | 119 | 151 | - | - | |
Lac8g1599 | 479 | CDD | PUB | 170 | 266 | - | - | |
Lac8g1599 | 479 | ProSiteProfiles | UBX domain profile. | 359 | 443 | IPR001012 | GO:0005515(InterPro) | |
Lac8g1599 | 479 | SUPERFAMILY | Ubiquitin-like | 330 | 442 | IPR029071 | - | |
Lac8g1599 | 479 | Gene3D | - | 177 | 266 | - | - | |
Lac8g1599 | 479 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 123 | 154 | IPR013087 | - | |
Lac8g1599 | 479 | Pfam | PUB domain | 182 | 256 | IPR018997 | - | |
Lac8g1599 | 479 | PANTHER | PLANT UBX DOMAIN-CONTAINING PROTEIN 2 | 1 | 470 | - | GO:0050832(PANTHER) | |
Lac8g1599 | 479 | MobiDBLite | consensus disorder prediction | 57 | 88 | - | - | |
Lac8g1599 | 479 | Pfam | UBX domain | 360 | 439 | IPR001012 | GO:0005515(InterPro) | |
Lac8g1599 | 479 | Gene3D | - | 353 | 445 | - | - | |
Lac8g1599 | 479 | SUPERFAMILY | PUG domain-like | 181 | 244 | IPR036339 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac6g2388 | Lac-Chr6:41569942 | Lac8g1599 | Lac-Chr8:33801780 | 4.00E-08 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24278 | PF00789 | UBX | 1.90E-07 | CL0072 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g1599 | K14011 | - | csv:101209321 | 807.364 |