Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1609 ATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTTCATCAACCAAAACGACGACGTATCGACCGCCGTTATCGATAAAACTTCTGATATTACCCGCTTTCGAAACTCGGCCATTCGAGCCACTTTGAACCAAGCCATGGTGGCCTACCACCACCTTCTCTCCGCCGTGAATATAGATTCCTTCGACGACGATAAAGACGACAATAGAGCTAAATTAGCTTTGATTGATTGTTTGGAACTCTACGAGGATTCGATCGTCGAACTCAACCATTCGACAATCAACTCCATGAGTGCCAAACCGATCGAACACTCGACATCGCTAAGTGCTTCACTAGCGAACCATCAAACATGTCGAGATGGATTTCGAGATTTCGGGTTTTCGTCCGATCATTTGAATTCCATTTTCCCGTTTCGAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTCGCCATCGCCAAGGCCGCTGCCGCTACTTCCTCCGCCACCGGAGGCCGGAGGCTGCTAGCGGACTCGTTTCCCAGTTGGGTTTCCGGTGATGATAGGATGCTCCTCCAGGACACGGGTGGAAAGGCGGCGGATATCGTGGTGGCCCAAGATGGGAGCGGCGATTTTAGGACGATATCGGAGGCGGTGGCGGCGGCAGCGGAGGCGAGGAAGGGAGGCGGAAGGTTTGTTATATACGTAAAAGGTGGGGTTTACAGAGAGAATGTTGAGATTAAGAAGACGATGAAGAATATTATGATGATCGGAGATGGGATTGATTCGACGATCGTTACAGCTATGAAGAACGTCCAAGATGGATCGACCACTTTCCGATCAGCCACTTTTGCTGTGGCCGGCGAGGGGTTCATCGCCAAAGACATGACATTCGAGAACACGGCAGGGCCGGAGAAACACCAAGCCGTCGCACTCCGATCAAACGCCGATCGCTCAGTTTTCTACCGGTGCAGCTTCAAAGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCAGTTCTACCGTGAATGCCACATTTACGGAACCATCGACTTTATATTCGGCGACAGCGCCGCCGTATTTCAAAACTGCAACATCTTCGTCAGAAAGCCGATGAATAACCAGAAAAACACCGTCACGGCGCAGGCGAGATCCGACCCGAATGAGAACACCGGGTTCGTGATCCATAATTCCGTCGTCGGAGCGGCGCCGGACCTGAAGCCGGTGGAGGCTCTGTACGAAACTTATTTGGGGAGGCCGTGGAAGGCCTATTCGAGGACGGTGGTAATGAGGAGTTTTTTGGATGGGCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGCACGCTTTATTATGGCGAGTTTATGAACACCGGCGGCGGGGCGAGTACGACGGGGAGGGTGCAGTGGCCGGGATATCATGTTATGACGAGTGCGGCGGAGGCCGGGAGGTTTACGGTGGAGAATTTCTTGGAAGGAGGAGATTGGATTCCGGCCACTGGCGTGCCGTTTGCAAATGGGTTATGA 1536 52.34 MSCSQTPYPDLCFHFINQNDDVSTAVIDKTSDITRFRNSAIRATLNQAMVAYHHLLSAVNIDSFDDDKDDNRAKLALIDCLELYEDSIVELNHSTINSMSAKPIEHSTSLSASLANHQTCRDGFRDFGFSSDHLNSIFPFRILSNFSKLVSNSLAIAKAAAATSSATGGRRLLADSFPSWVSGDDRMLLQDTGGKAADIVVAQDGSGDFRTISEAVAAAAEARKGGGRFVIYVKGGVYRENVEIKKTMKNIMMIGDGIDSTIVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSVFYRCSFKGYQDTLYAHSNRQFYRECHIYGTIDFIFGDSAAVFQNCNIFVRKPMNNQKNTVTAQARSDPNENTGFVIHNSVVGAAPDLKPVEALYETYLGRPWKAYSRTVVMRSFLDGLIEPAGWLPWAGDFGLSTLYYGEFMNTGGGASTTGRVQWPGYHVMTSAAEAGRFTVENFLEGGDWIPATGVPFANGL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33968880 33971657 + Lag0028996.1 Lac8g1609 617443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1609 511 PANTHER PECTINESTERASE 2 502 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac8g1609 511 CDD PMEI-like_3 2 154 - -
Lac8g1609 511 SUPERFAMILY Pectin lyase-like 196 509 IPR011050 -
Lac8g1609 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Lac8g1609 511 ProSitePatterns Pectinesterase signature 1. 225 244 IPR018040 -
Lac8g1609 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 159 IPR035513 -
Lac8g1609 511 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Lac8g1609 511 FunFam Pectinesterase 193 511 - -
Lac8g1609 511 Gene3D - 194 511 IPR012334 -
Lac8g1609 511 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
Lac8g1609 511 Pfam Pectinesterase 198 496 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac8g1609 511 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Lac8g1609 511 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1474 Lac-Chr4:33253333 Lac8g1609 Lac-Chr8:33968880 9.10E-68 dispersed
Lac4g3068 Lac-Chr4:48810519 Lac8g1609 Lac-Chr8:33968880 6.50E-124 dispersed
Lac5g3038 Lac-Chr5:48276947 Lac8g1609 Lac-Chr8:33968880 4.70E-114 dispersed
Lac7g0342 Lac-Chr7:2637606 Lac8g1609 Lac-Chr8:33968880 3.30E-121 dispersed
Lac7g0343 Lac-Chr7:2660085 Lac8g1609 Lac-Chr8:33968880 3.90E-133 dispersed
Lac8g1609 Lac-Chr8:33968880 Lac8g2163 Lac-Chr8:39965811 9.60E-92 dispersed
Lac8g1609 Lac-Chr8:33968880 Lac11g1717 Lac-Chr11:31201364 7.50E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1609 - - - 0.0