Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1624 ATGAAGAGGGAGCACCATCATCTTCATCCTCGTCCGGAGCCGCCTTCCACGGCCGCCGCCTCTAATGGGGACGGTTATTTGAACACTGGCAAGGCTAAGCTCTGGGAGGAGGAGGCCCAGCTCGACGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGATGTTGCCATGAAGCTCGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAAGATACTGGCCTTTCGCATCTCGCTTTCGACACTGTTCATTACAATCCTTCCGATCTCTCCACTTGGCTTGAAAGTATGCTCACCGAGCTCCATCCCCCGCCTAATTTTCCGCCGCCGCCGCCCTCGCAGTTGGACGATTCGTCCTTTCTAGCTCCGGCCGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGGCAAAGCAGCAGCCGGATTTTCGAGGAATCTTCCAGTTCTGATTACGACCTTAAAGCTATCACCAGCAGCGCGATTTATTCGCCTAGAGAGAACAAGCGTTTGAAGTCCGAGCCGGACTCGGATTTGTTCTCCACCTCCGCGATTGGGGCTTCTGATTCTGCAACTCGCCCCGTAGTCCTCGTCGACTCGCAGGAGAATGGAATTCAACTGGTTCATGCTCTGATGGCCTGCGCCGAAGCCGTACAGCAGAACAATCTGAATCTGGCGGAGGCTCTGGTGAAGCGAATCGGTTTCTTGGCGGTTTCTCAAGCTGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCATTGGCACGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTCGATCATTCAATGTCCGATATGCTTCAGTTGCATTTCTACGAGAGCTGTCCGTATCTGAAATTCGCTCACTTCACTGCCAATCAAGCGATTCTCGAAGCTTTCGAAGGAAAGAAGCGCGTTCACGTCATCGATTTCTCGATGAACCAAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTTGCTCTCCGGCCGAGCGGTCCTCCAGCCTTCCGGCTCACCGGAATCGGACCTCCAGCGCCGGATAACTCCGATTACCTTCAAGAAGTCGGCTGGAAGCTGGCTAAATTAGCCGAAACCATCCATGTCGAGTTCGAATACAGAGGATTTGTCGCGAACAGCTTGGCGGATCTGGACGCGTCGATGCTGGAACTCCGGCCGAGCGAAGTGGAATCGGTGGTGGTGAACTCGGTGTTCGAGTTGCATAAGCTACTGGCTCGGCCGGGCGCCATTGAAAAGGTCCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATGACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGTTTCACTGAGTCACTCCACTACTACTCGACGCTTTTTGACTCGTTGGAGGGCTCGCCCAACAACGAGGACAAGGTCATGTCCGAAATGTACCTCGGGAAGCAAATCTGCAACGTGGTGGCTTGCGAAGGCGCCGACCGAGTCGAGCGGCACGAGACTCTGACTCAGTGGCGGAATCGGCTGTCCTCCGCCGGGTTCGAGCCCATCCACCTCGGCTCGAACGCGTTCAAGCAAGCGAGTATGCTCCTGGCCCTATTCGGCAGCGGAGAAGGATACCGAGTGGAAGAGAACAACGGATCGCTAATGCTGGGATGGCACACACGCCCACTCATCGCCACCTCCGCCTGGAAACTCGGCAACAACACGGTGGTAGCTCACTGA 1755 55.61 MKREHHHLHPRPEPPSTAAASNGDGYLNTGKAKLWEEEAQLDGGMDELLAVLGYKVKSSDMADVAMKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPPPNFPPPPPSQLDDSSFLAPAESSTITSIDYDPQRQSSSRIFEESSSSDYDLKAITSSAIYSPRENKRLKSEPDSDLFSTSAIGASDSATRPVVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGFLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSMSDMLQLHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPAFRLTGIGPPAPDNSDYLQEVGWKLAKLAETIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGAIEKVLSVVKQMKPEIMTVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNEDKVMSEMYLGKQICNVVACEGADRVERHETLTQWRNRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGNNTVVAH 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34235615 34237369 + Lag0029011.1 Lac8g1624 617458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1624 584 SMART DELLA_2 46 119 - -
Lac8g1624 584 MobiDBLite consensus disorder prediction 110 124 - -
Lac8g1624 584 FunFam DELLA protein GAI 44 109 - -
Lac8g1624 584 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Lac8g1624 584 MobiDBLite consensus disorder prediction 109 128 - -
Lac8g1624 584 Pfam GRAS domain family 216 575 IPR005202 -
Lac8g1624 584 MobiDBLite consensus disorder prediction 1 25 - -
Lac8g1624 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 574 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lac8g1624 584 Gene3D - 44 109 IPR038088 -
Lac8g1624 584 ProSiteProfiles GRAS family profile. 207 575 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0204 Lac-Chr11:1964965 Lac8g1624 Lac-Chr8:34235615 4.40E-175 dispersed
Lac1g0621 Lac-Chr1:14884041 Lac8g1624 Lac-Chr8:34235615 7.10E-55 dispersed
Lac5g2049 Lac-Chr5:38957428 Lac8g1624 Lac-Chr8:34235615 6.60E-27 dispersed
Lac8g1624 Lac-Chr8:34235615 Lac8g1949 Lac-Chr8:37867981 4.30E-181 dispersed
Lac8g1624 Lac-Chr8:34235615 Lac3g0856 Lac-Chr3:6861724 7.80E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24279 PF03514 GRAS 4.50E-137 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1624 K14494 - csv:101204164 1057.74