Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1678 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCGGGCCATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATACAGACTAGCCGCTGGGCTAGCCTTCCACCTGAGTTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGGAATGTCGTTGCTTGTGCTGCTGTATGTAGGTCGTGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAATTCTCCGGGAAAATTACCTTCCCAATTGCGTTGAAGCAGCCTGGGCCTCGTGATAGTACTATTCAATGCTTTATCAAGAGGAACAAATCAAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACCTCTACAGAGTATGTTATATCGTTGGCTGCCGACGATATATCAAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAACCTCCCTACAACAGCAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTGCCAGCTGGTAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTGGGTACGAGAGGACCCCGGAGGATGCACTGCACCATGTACTCCATCCCCACTTCATCTCTTGAGCCAGGTTGCTCCGTTCCGGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGCAGCATCTCATTCTCCAAGTCGATCGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGGGGAAGGATCGACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTAAATTTTCGGGGGAGGGTGACAGTTGCATCTGTAAAGAATTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAAGCACCAGTACCGTCGCAGCCACCTCCGCAGCCTGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCGTTCCAGGCTTTTGCTATATGTCTGAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.81 MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDSTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34901823 34904277 - Lag0029065.1 Lac8g1678 617512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1678 432 CDD F-box_AtTLP-like 53 97 - -
Lac8g1678 432 FunFam Tubby-like F-box protein 110 432 - -
Lac8g1678 432 Gene3D - 48 101 - -
Lac8g1678 432 Pfam Tub family 114 427 IPR000007 -
Lac8g1678 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Lac8g1678 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Lac8g1678 432 PANTHER TUBBY-RELATED 47 431 - -
Lac8g1678 432 MobiDBLite consensus disorder prediction 368 388 - -
Lac8g1678 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Lac8g1678 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Lac8g1678 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Lac8g1678 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Lac8g1678 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2922 Lac-Chr1:50034842 Lac8g1678 Lac-Chr8:34901823 3.30E-119 dispersed
Lac2g1686 Lac-Chr2:15347784 Lac8g1678 Lac-Chr8:34901823 1.50E-207 dispersed
Lac5g2398 Lac-Chr5:42678189 Lac8g1678 Lac-Chr8:34901823 2.00E-102 dispersed
Lac5g2537 Lac-Chr5:43923210 Lac8g1678 Lac-Chr8:34901823 2.60E-191 dispersed
Lac7g0837 Lac-Chr7:6759323 Lac8g1678 Lac-Chr8:34901823 3.20E-119 dispersed
Lac8g1678 Lac-Chr8:34901823 Lac5g2113 Lac-Chr5:39768262 1.30E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24283 PF01167 Tub 8.90E-116 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1678 K19600 - csv:101203074 843.958