Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1678 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCGGGCCATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATACAGACTAGCCGCTGGGCTAGCCTTCCACCTGAGTTATTATGTGATGTGGTCCGAAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGGAATGTCGTTGCTTGTGCTGCTGTATGTAGGTCGTGGAGGGACATGTGCAAAGAAATTGTCAAAAGTCCCGAATTCTCCGGGAAAATTACCTTCCCAATTGCGTTGAAGCAGCCTGGGCCTCGTGATAGTACTATTCAATGCTTTATCAAGAGGAACAAATCAAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACCTCTACAGAGTATGTTATATCGTTGGCTGCCGACGATATATCAAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTCATTATATATGATACACAACCTCCCTACAACAGCAACCAAATTCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTGCCAGCTGGTAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTGGGTACGAGAGGACCCCGGAGGATGCACTGCACCATGTACTCCATCCCCACTTCATCTCTTGAGCCAGGTTGCTCCGTTCCGGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGCAGCATCTCATTCTCCAAGTCGATCGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGGGGAAGGATCGACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTAAATTTTCGGGGGAGGGTGACAGTTGCATCTGTAAAGAATTTTCAGCTGATTGCTGCAACCTCACCTGCTGCAGAAGCACCAGTACCGTCGCAGCCACCTCCGCAGCCTGCCCAACCTACCCATTCGGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCGTTCCAGGCTTTTGCTATATGTCTGAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.81 MSFRSILRDVRDGFGSLSRRSFEVRLPGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGPRDSTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34901823 34904277 - Lag0029065.1 Lac8g1678 617512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1678 432 CDD F-box_AtTLP-like 53 97 - -
Lac8g1678 432 FunFam Tubby-like F-box protein 110 432 - -
Lac8g1678 432 Gene3D - 48 101 - -
Lac8g1678 432 Pfam Tub family 114 427 IPR000007 -
Lac8g1678 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Lac8g1678 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Lac8g1678 432 PANTHER TUBBY-RELATED 47 431 - -
Lac8g1678 432 MobiDBLite consensus disorder prediction 368 388 - -
Lac8g1678 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Lac8g1678 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Lac8g1678 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Lac8g1678 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Lac8g1678 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Lac8g1678 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1678 K19600 - - csv:101203074 843.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2922 Lac-Chr1:50034842 Lac8g1678 Lac-Chr8:34901823 3.30E-119 dispersed
Lac2g1686 Lac-Chr2:15347784 Lac8g1678 Lac-Chr8:34901823 1.50E-207 dispersed
Lac5g2398 Lac-Chr5:42678189 Lac8g1678 Lac-Chr8:34901823 2.00E-102 dispersed
Lac5g2537 Lac-Chr5:43923210 Lac8g1678 Lac-Chr8:34901823 2.60E-191 dispersed
Lac7g0837 Lac-Chr7:6759323 Lac8g1678 Lac-Chr8:34901823 3.20E-119 dispersed
Lac8g1678 Lac-Chr8:34901823 Lac5g2113 Lac-Chr5:39768262 1.30E-121 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G76900 73.0 7.8e-178 620.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G76900 71.0 3.2e-171 599.0
Lac8g1678 . 1 432 TUB Transcription Factor Family AT1G76900 69.7 9.3e-171 597.4
Lac5g2113 . 1 401 TUB Transcription Factor Family AT1G76900 50.9 4.7e-114 409.1
Lac5g2537 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.5e-101 365.2
Lac8g1678 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 1.8e-94 343.2
Lac2g1686 . 173 430 TUB Transcription Factor Family AT1G25280 68.3 3.2e-94 342.4
Lac5g2113 . 165 401 TUB Transcription Factor Family AT1G25280 55.8 2.4e-70 263.1
Lac7g0837 . 154 397 TUB Transcription Factor Family AT1G25280 50.5 1.1e-67 254.2
Lac12g2379 . 154 400 TUB Transcription Factor Family AT1G25280 51.6 3.6e-66 249.2
Lac1g2922 . 176 412 TUB Transcription Factor Family AT1G25280 50.9 2.2e-63 240.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT5G18680 60.6 5.2e-98 355.1
Lac7g0837 . 98 397 TUB Transcription Factor Family AT5G18680 60.1 7.8e-94 341.3
Lac2g1686 . 112 430 TUB Transcription Factor Family AT5G18680 53.0 2.5e-84 309.7
Lac8g1678 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 1.6e-83 307.0
Lac5g2537 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 3.1e-82 302.8
Lac5g2113 . 103 401 TUB Transcription Factor Family AT5G18680 53.0 7.1e-79 291.6
Lac5g2398 . 120 388 TUB Transcription Factor Family AT5G18680 50.2 1.1e-68 257.7
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G18280 61.9 3.3e-140 495.7
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G18280 61.9 3.1e-138 489.2
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 6.0e-118 421.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 7.4e-116 414.8
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G18280 51.8 1.2e-113 407.5
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G18280 52.0 2.0e-113 406.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G18280 52.0 1.0e-112 404.4
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G18280 51.4 1.1e-95 347.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G47900 66.9 5.6e-159 558.1
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G47900 67.1 1.4e-157 553.5
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G47900 56.1 6.2e-134 474.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.9e-132 467.6
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 8.4e-131 464.5
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G47900 56.6 4.2e-122 435.6
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G47900 53.1 6.9e-117 418.3
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G47900 52.6 7.4e-103 371.7
Lac4g2724 . 82 307 TUB Transcription Factor Family AT1G16070 60.9 2.3e-74 276.6
Lac2g1686 . 67 430 TUB Transcription Factor Family AT1G43640 71.3 1.0e-148 523.9
Lac5g2537 . 66 428 TUB Transcription Factor Family AT1G43640 68.5 7.4e-147 517.7
Lac8g1678 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 9.4e-142 500.7
Lac12g2379 . 47 400 TUB Transcription Factor Family AT1G43640 50.9 2.9e-106 382.9
Lac7g0837 . 49 397 TUB Transcription Factor Family AT1G43640 51.9 3.0e-103 372.9
Lac1g2922 . 33 412 TUB Transcription Factor Family AT1G47270 57.9 3.6e-123 439.1
Lac5g2113 . 22 401 TUB Transcription Factor Family AT1G47270 57.8 2.3e-122 436.4
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 7.3e-116 414.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G47270 50.6 4.4e-113 405.6
Lac8g1678 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 1.4e-111 400.6
Lac5g2398 . 1 388 TUB Transcription Factor Family AT1G53320 70.9 2.4e-156 549.3
Lac5g2113 . 8 401 TUB Transcription Factor Family AT1G53320 51.0 1.8e-103 373.6
Lac7g0837 . 98 397 TUB Transcription Factor Family AT3G06380 61.7 1.2e-94 344.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT3G06380 60.6 1.3e-93 340.5
Lac5g2537 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 3.0e-82 302.8
Lac8g1678 . 116 432 TUB Transcription Factor Family AT3G06380 53.0 5.6e-81 298.5
Lac2g1686 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 9.6e-81 297.7
Lac5g2113 . 107 401 TUB Transcription Factor Family AT3G06380 53.5 1.1e-79 294.3
Lac1g2922 . 118 412 TUB Transcription Factor Family AT3G06380 50.7 2.3e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24283 PF01167 Tub 8.90E-116 CL0395 Lac TF