Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1685 ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCATACGGCGGTCAGGATGGACATAGAACAGATGCCGGACGCTCCACAGCGTGCTTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTCGAGGATCTTCTTCTCTTCGACCCTCCCGACCTCGATTTGTCATCTTCCCTTCCTTCTCCGTCCCCGTCGCCGTCGCCGGCGGGGGCTCGTGTGGCCGTCGATTCCTTCAATTCCAAGTCCCCTGAAGACGCCTCTGCTTCGAAACCTAGGGCTGGTAACGGCAACTCCGCTTCCTTCGGCGCTCACTGCCGGAGCTTTTCGATGGATTCCGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGCAGCGACGGTGAGGTACTCGGCGGGAGAGTAGTGACGGTCGGGGAGAAGAAGATGGGCCGCCATAGGCATAGCAATTCCATGGATGGCTCTTTGACGTCCTCGTTTGAAGCTGAGTCCACCGGCGTAATTGATTGCTCCAGGAAGGCTATGGCGCCTGATAAACTCGCTGAGCTGGCTTTGATGGACCCCAAAAGAGCTAAGAGGATCCTGGCGAATAGACAATCTGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTGGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTGTCTGCACAGGTCACAGTTTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGCTGCAGGCCATGGAGCAGCAAGCCCAACTCAGAGATGCTCTGAATGAGACACTGAGGGAGGAAGTGCAGCGGCTCAAGATAGCCGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCTCCTCCATTCCCTCCTCTCCAGCCATCCCTGCTTCAGTTTAGTAACTCTCAGAATCATCAACAGCAACAGCTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTTCACCGTCCCAGCTTCCCGGAGCTTAA 1047 54.82 MMDLNFTARKPPHTAVRMDIEQMPDAPQRAYHHRRSHSDTSFRFANFEDLLLFDPPDLDLSSSLPSPSPSPSPAGARVAVDSFNSKSPEDASASKPRAGNGNSASFGAHCRSFSMDSDFFEGLGMAGDGSDGEVLGGRVVTVGEKKMGRHRHSNSMDGSLTSSFEAESTGVIDCSRKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAQLRDALNETLREEVQRLKIAAAQLPVANGNSFNIGGGLPPPFPPLQPSLLQFSNSQNHQQQQLLHMSQPDARGGSSPSQLPGA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34972939 34974511 + Lag0029072.1 Lac8g1685 617519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1685 348 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 331 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac8g1685 348 CDD bZIP_plant_RF2 194 243 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1685 348 MobiDBLite consensus disorder prediction 85 103 - -
Lac8g1685 348 MobiDBLite consensus disorder prediction 300 348 - -
Lac8g1685 348 FunFam Transcription factor VIP1 192 245 - -
Lac8g1685 348 MobiDBLite consensus disorder prediction 313 348 - -
Lac8g1685 348 Coils Coil 244 288 - -
Lac8g1685 348 Gene3D - 192 245 - -
Lac8g1685 348 Pfam bZIP transcription factor 193 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1685 348 Coils Coil 216 236 - -
Lac8g1685 348 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1685 348 SMART brlzneu 189 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1685 348 MobiDBLite consensus disorder prediction 84 103 - -
Lac8g1685 348 SUPERFAMILY Leucine zipper domain 193 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1712 Lac-Chr2:15878178 Lac8g1685 Lac-Chr8:34972939 1.20E-88 dispersed
Lac4g1383 Lac-Chr4:32106202 Lac8g1685 Lac-Chr8:34972939 9.50E-40 dispersed
Lac4g1385 Lac-Chr4:32117903 Lac8g1685 Lac-Chr8:34972939 1.50E-40 dispersed
Lac7g1072 Lac-Chr7:9539670 Lac8g1685 Lac-Chr8:34972939 7.50E-36 dispersed
Lac7g1075 Lac-Chr7:9582201 Lac8g1685 Lac-Chr8:34972939 1.20E-42 dispersed
Lac8g1685 Lac-Chr8:34972939 Lac9g2327 Lac-Chr9:42613932 1.10E-35 dispersed
Lac8g1685 Lac-Chr8:34972939 Lac9g2018 Lac-Chr9:39761196 1.70E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24285 PF00170 bZIP_1 2.60E-07 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1685 K20557 - csv:101215277 426.017