Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g1690 | ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGCTAGCAGAACCCGGACCTTGCTTGCCGGACCCAGAGGCGGTGTCAATGTCGCCAGCTCTCGCAAGCTCGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGATCCCCGGCGTTCGAGGGGGAGGCAACTTCGTCGACCCAGAATGGCTAGATGGCTCACTTCCAGGCGACTACGGCTTCGACCCACTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTAGTCGGAATCTTCATAGGCCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCCGATCCGAGCGCAATCGCCCCATTCTCCTTCGGAACACTGCTCGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCGGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTCCGTGGAATGGGCGACGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACGGGAGAACAGGGGTATCCCGGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATGGGGTTTACATTGCGGACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGGATCGCCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA | 768 | 57.42 | MAATSGAVLNGLGSPFLRGASRTRTLLAGPRGGVNVASSRKLVIVAAAQPKKSWIPGVRGGGNFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGIPWFEAGADPSAIAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGSIKDGVYIADSEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL | 255 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 34998592 | 35000236 | - | Lag0029077.1 | Lac8g1690 | 617524 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g1690 | 255 | Gene3D | Chlorophyll a/b binding protein domain | 67 | 254 | - | - | |
| Lac8g1690 | 255 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 51 | 253 | IPR001344 | GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro) | |
| Lac8g1690 | 255 | Pfam | Chlorophyll A-B binding protein | 67 | 243 | IPR022796 | - | |
| Lac8g1690 | 255 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 67 | 254 | - | - | |
| Lac8g1690 | 255 | SUPERFAMILY | Chlorophyll a-b binding protein | 65 | 255 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0319 | Lac-Chr6:2619212 | Lac8g1690 | Lac-Chr8:34998592 | 3.10E-33 | dispersed | |
| Lac8g1690 | Lac-Chr8:34998592 | Lac8g2422 | Lac-Chr8:42322227 | 1.20E-21 | dispersed | |
| Lac8g1690 | Lac-Chr8:34998592 | Lac10g3209 | Lac-Chr10:46217220 | 5.40E-27 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g1690 | K08917 | - | csv:101204705 | 491.115 |