Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1700 ATGGCGGATATGGATTTCCTTGAGGGCGTTGGGGAAAGTTCTTCGCCGCCTCCAACCTTCGCTGCCTTCTCTGGAGGCGTCCACGATGTTCGGAACGATGTTTATACTCGCTTGCTTCAGACTGGACATGAGGAGGCTGTTTCTAATCCCCAATTTCGCGACAACTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAATCTTCTTTCCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGCTTTCTGGAGCACGTAAGTACTAAATCAGATGGCAATGATGATCACGAACTTGATAGTAGTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGACTTCCACTGTCACACAAGAGAACTAGAGGCAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTGAATTTGGATGTTAGAAAGAACTCGAAGGCCATGGATGGGAGATATCATATGGAAAAATTTTCCAAAAGGCCGGGGATTTCACATGTTCCAATACATGAAGTGATATTTTCAACTACTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTCTCTGATATAGGACTCAACATTCGAGAAGCACATGTGTTTTCGACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTCGAGGAAACTGATGGCTTGTATGAAGCTATGGAAAAAGCAGTTGCTAGATATGAGGGGTCATGGTCTGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGATGCCCAGGCAAAACCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTATCATGGATTATATTTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCTATTCTCAGGAAGGTCCAGCATAAAAATGTAGTACGTTTTATAGGTGCATGTACAAACTCTCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTAAAGCTCTCACAACTCCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTACATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACACTCAACATGTTGTAAAGGTGGCAGATTTTGGTGTTGCACGATTCCAAAGCCAAGAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCGCCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGCTGTGGGAACTAACAACAGCAAAGGTTCCTTATGATTCCATGACACCACTACAAGCCGCACTTGGAGTAAGACAGGGACTACGTCCAGATCTTCCCAAAAATGTGCACCCTAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCCGTAAATCGACCACCATTTACCGAGATAAAAGCTGAACTTGAAAATCTCCTTGAAGAAGTTCAGATGTGTACAAAATATGAAGAAAATTGTGCAGCAGTTAATGGCAGCTGA 1692 41.37 MADMDFLEGVGESSSPPPTFAAFSGGVHDVRNDVYTRLLQTGHEEAVSNPQFRDNLDAHFNRLPPSYGLDVNMEKVEDVLLHQNLLSLAKDPEKCPVYHIRFLEHVSTKSDGNDDHELDSSLLSGSSNEAADRRLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAMDGRYHMEKFSKRPGISHVPIHEVIFSTTDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKPADWEIDRRLLKIGERIASGSCGDLYHGLYFGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTQHVVKVADFGVARFQSQEGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELTTAKVPYDSMTPLQAALGVRQGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTEIKAELENLLEEVQMCTKYEENCAAVNGS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35179569 35194181 + Lag0029087.1 Lac8g1700 617534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1700 563 Gene3D Transferase(Phosphotransferase) domain 1 370 561 - -
Lac8g1700 563 PRINTS Tyrosine kinase catalytic domain signature 449 459 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 PRINTS Tyrosine kinase catalytic domain signature 511 533 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 PRINTS Tyrosine kinase catalytic domain signature 403 421 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 PRINTS Tyrosine kinase catalytic domain signature 468 490 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 PRINTS Tyrosine kinase catalytic domain signature 366 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 PANTHER SERINE-THREONINE PROTEIN KINASE 185 544 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac8g1700 563 ProSiteProfiles ACT domain profile. 191 265 IPR002912 -
Lac8g1700 563 Pfam Protein tyrosine and serine/threonine kinase 292 540 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 SUPERFAMILY ACT-like 190 260 IPR045865 -
Lac8g1700 563 CDD STKc_MAP3K-like 298 540 - -
Lac8g1700 563 SUPERFAMILY Protein kinase-like (PK-like) 281 545 IPR011009 -
Lac8g1700 563 ProSiteProfiles Protein kinase domain profile. 292 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1700 563 FunFam Serine/threonine-protein kinase isoform 1 282 370 - -
Lac8g1700 563 Gene3D Phosphorylase Kinase; domain 1 280 369 - -
Lac8g1700 563 SMART serkin_6 292 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0597 Lac-Chr2:4496566 Lac8g1700 Lac-Chr8:35179569 5.40E-12 dispersed
Lac8g1700 Lac-Chr8:35179569 Lac8g2560 Lac-Chr8:43304097 9.10E-51 dispersed
Lac8g1700 Lac-Chr8:35179569 Lac5g0072 Lac-Chr5:625725 1.20E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86363 PF07714 PK_Tyr_Ser-Thr 6.20E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1700 - - - 0.0