Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1754 ATGTCTGCAGTGTGTTCAGTTAGGCCAACCAAAGGTGAGGTTGGACTCCTGCGGACTACTGTGAAGCTTTCTGGAATGGCGAAAGGGGAGGGGAGATGGACGAAGACAGAATTGGCAAAGTTCCTTGTGGTTTGCTGGCAAATTTGGCCTCATAGGAATGCTGTTTTTCACAACAAAGCTCAAATAGACATACAACAATTGGAGCAACAAATTAGCAAAAATAAGATCGAAAAATCGACCCCAGAGGATAAACAGACCAGAGGGTCGGCCTCGTCTGCGCGGGCCGAGCTCTTCCGCATTCGTTCTGCCCCTGCTGCCCATGACCGCCCCGATTCCACCTGGCCACGTCTTCCCCCTCTCATACAAATTTACTTGGTGGCACGTGAAGGTCAGGTAATTCTGGACCATCCCGAAATCGAAGGGGTAGACGAGGACAACATGACCAGAAATCGAAGACACAACCTAGAAATGGACCCGAGAGGGGAAATGAGCCATAGGGTTGGGCCAAGGCCGAAGAGATTGGGCCTTGGCCTAACCCCGCTCGGCCTGCTTGTGCGGGTCGAGTTTCCTCCCCTCCACTCGGTCACGTCTTCCTCAGCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAATTGGAGTTGGGAAAAAGACTTCCAAATAAGAAATGTCCACCGTGTTTATGGCTTCAGCCAAAACTTTATTACCCAACTAAACTAAATCAAGGATTTCTCTTTCTTCGCTTTTGTCAACCCGTCGGAGCCTCCACCGCCGCCGTTCACCGCCGCCGCTTCCGCCGTCATCTCAACTCTGCTGCTGCTACAAGGTCCAACTCCTTCAACTCCGCGGACGAATCTTCCTTCCTTTTACCCTACCCCTCTTCTCCCCGCTTGGGGATGCCGATCAAGAGGCCACTCTACGACCGCCAGAACCATCCTCCTCACCATCTTCCTCTCCGACGGCGCCGTTTTCTCTATGAAAATCAGACTGGAAAGTTCAGCTATGGCTATTCTAGTTTCAAGGGCAAGAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATCTCTGAAGTTGATGGGCAGATGGTCGCATTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAACCATCCAGACTTTATCAAAGATACAAAGACAGCTATTATTGAGGTTTTTAGACAGACAGATGCCGATTATATTAATGAAGAGAGAGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTAGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCCAGAGTAGTTGCGTCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAGCCTGATAGATCAGATGAACGGGAAAGGATTGAACAAGCTGGAGGTTTCATTATTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACAATATGTTGTCGCTGATCCCGAAATTAAGGAAGAAGAAATCGACAGTGTGGATTTTATTATTATTGCAAGCGATGGACTTTGGAACGTCATATCGAATGAGGAAGCCGTAGCATTAGTGCAACACATCCAAGATGCAGAAGTGGCGTCAAGAAAACTAATCCAAGAAGCTTATGCAAGAGGGAGTGCCGACAACATTACATGCGTCATTGTACGATTGGGTTTATCGTAA 1749 48.03 MSAVCSVRPTKGEVGLLRTTVKLSGMAKGEGRWTKTELAKFLVVCWQIWPHRNAVFHNKAQIDIQQLEQQISKNKIEKSTPEDKQTRGSASSARAELFRIRSAPAAHDRPDSTWPRLPPLIQIYLVAREGQVILDHPEIEGVDEDNMTRNRRHNLEMDPRGEMSHRVGPRPKRLGLGLTPLGLLVRVEFPPLHSVTSSSASTNSLLVSREGQLELGKRLPNKKCPPCLWLQPKLYYPTKLNQGFLFLRFCQPVGASTAAVHRRRFRRHLNSAAATRSNSFNSADESSFLLPYPSSPRLGMPIKRPLYDRQNHPPHHLPLRRRRFLYENQTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSNHPDFIKDTKTAIIEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGILAVSRAFGDKLLKQYVVADPEIKEEEIDSVDFIIIASDGLWNVISNEEAVALVQHIQDAEVASRKLIQEAYARGSADNITCVIVRLGLS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35770777 35779613 + Lag0029141.1 Lac8g1754 617588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1754 582 Pfam Protein phosphatase 2C 335 572 IPR001932 -
Lac8g1754 582 CDD PP2Cc 333 579 IPR001932 -
Lac8g1754 582 ProSiteProfiles PPM-type phosphatase domain profile. 334 579 IPR001932 -
Lac8g1754 582 SUPERFAMILY PP2C-like 328 579 IPR036457 -
Lac8g1754 582 MobiDBLite consensus disorder prediction 74 95 - -
Lac8g1754 582 PANTHER PROTEIN PHOSPHATASE 308 577 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac8g1754 582 Coils Coil 57 77 - -
Lac8g1754 582 FunFam probable protein phosphatase 2C 59 326 581 - -
Lac8g1754 582 ProSitePatterns PPM-type phosphatase domain signature. 365 373 IPR000222 GO:0043169(InterPro)
Lac8g1754 582 Gene3D - 323 581 IPR036457 -
Lac8g1754 582 SMART PP2C_4 324 577 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0519 Lac-Chr2:3855998 Lac8g1754 Lac-Chr8:35770777 1.30E-99 dispersed
Lac5g3019 Lac-Chr5:48090074 Lac8g1754 Lac-Chr8:35770777 7.50E-90 dispersed
Lac5g3058 Lac-Chr5:48393851 Lac8g1754 Lac-Chr8:35770777 8.00E-28 dispersed
Lac6g0514 Lac-Chr6:4311847 Lac8g1754 Lac-Chr8:35770777 2.90E-16 dispersed
Lac7g2763 Lac-Chr7:46777990 Lac8g1754 Lac-Chr8:35770777 2.50E-34 dispersed
Lac8g1754 Lac-Chr8:35770777 Lac8g3063 Lac-Chr8:47318245 1.10E-38 dispersed
Lac8g1754 Lac-Chr8:35770777 Lac2g0725 Lac-Chr2:5585682 3.10E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1754 K17506 - csv:101220053 478.018