Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1770 ATGAACTATATTTGCAGATTAGACATGACACATCCAGCGGAGAAGCTTATCCGGCTGATGATGCTTTTCTCAGCAGTTTTAGTAGCGGCAGCGGCGGCATCATCAGACTGCGACCGACGATGTGGTAACCTGGAAATTCCATATCCGTTCGGAATGAAGGAAGGGTGTTATCTCAGTAACACTTTCTTAATCACCTGCAACAAAACTCATTATGATCCTCCAATGGCATTTCTAGAAGACAGCAACATTGAAGTCACCAATATATCCATCGTCAACGGCGAGCTCCACATCTTGCAGTACGTGGCCCGTAATTGCTACAAACAAAGTGGTTCCAATTACTACAATGAACCCCTTCTCGAAATATCCATGTTCACTATTTCCAGTACCAAAAACAAGTTCACGGTCATCGGCTGCGATACTTATGCTTTCATCGATGGGAAACTCGGAGGGGAAAACTACACAAGTGGCTGCATGTCAATGTGTGGAAGCATCAGTGCTGTAAGAGATGGCCCCTGCTCCGGCAATGGCTGTTGTCAGTTGGAGATTCCCAAAGGCCTAAAACACTTGGAGTTAGTGGTGAAAAGCTTTGAGAATCACACTAAAGTTCTCGACTTCAATCCCTGTGGATATGCTTTTGTAATTCAACAAGAGAACTTCACTTTCTCCTCCTCGTATCTTCGCAATTTTACTCGAAAGAAAGTTCCTCTGGTGCTTGATTGGGCCATCCCAACTGAAACTTGCTCAACGGTTGACAACAAAACCAATTGCATATGTGGACCAAATAGTAAGAAGATCAACTTCCTCGGTGAAAGATCTGAATATCGTTGCCAGTGCTTGGAAGGTTTTGAGGGTAATCCATATCTCTCTCAAGGTTGTCAAGACATAGATGAATGTGAGAATGGAAGTCATGAATGTAAATTCAAAGACGGGTGTGTTAACACACAAGGAAACTATACCTGCAACTGTCCTAAGAATTATAAAGGAGATAGCAGACGTGGGGGAGAAGGTTGCACCCAAAACTCCATGTCTTTCTTTCTTATCATCATCGGAATTGGCGTGGGTTTTACAATTTTAGTGATTGGCAGCGTATGGTTATACTTGGGTTACAAAAAGTGGAAGTTTATCCAACAAAAACAGAAGTTTTTTCAGAAAAATGGAGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAGTCACCGGCTGACATGCTTAGAATTTTCACTCGAGAAGAGTTAGAGAAGGCTACAAACAACTACAATGAAAGCGTCGTGGTCGGCAAAGGTGGCTTTGGTACCGTTTACAAAGGAGTCTTAGATGACGGTTCGACAATCGCAATCAAGAAATCAAAATTGGTGGATCGATCTCAAACCAACCAATTCATCAACGAAGTCATCGTTCTCTCCCAAATCAATCATCGGAACGTGGTCAGGCTCCTTGGGTGTTGTTTGGAGACAAAAGTTCCATTATTAGTGTACGAATTCATCTCTAATGGCACGCTCTTCGAACACATCCATGACAAAACCAAGAACTCTTCTCTTTCCTGGGAAGCTCGATTGAAAATAGCTTCGGAAACTGCCGGTGTCCTCTCGTACTTGCATTCTTCTGCTTCTACTCCTATTATCCACAGAGATATCAAGTCCACTAATATACTTTTAGACCATAATTTAACCGCCAAAGTCTCTGACTTTGGAGCTTCAAAGCTAGTTCCGTTGGATGTTACTCAGATATCCACAATGGTGCAAGGGACCCTTGGATATTTGGATCCTGAATATTTGTTGACAAGTGAGTTGACAGAGAAAAGCGATGTATACAGCTTTGGAATTGTGCTCTTGGAGCTTCTAACTGGGAAGAAGGCGGTGAGTTTTGTGGGGCCAGAAGCTGAGAGGAATTTAGCCATGTACGTGTTGTGTGCTATGAAAGAAGATCGTATTGAAGAAGTTGTGGAGAAGGAAATGATGACAGAAGCGAACTTTGAGCAGATAAAAGAAGTGGCAAGACTAGCAAAAAAGTGTGTGAGCGTTAAAGGCGAGGAGCGGCCCACCATGAAGGAGGTGGCTATGGAGTTGGAGGGGCTTCGACTAATGCGGGCTGAGCATTCATGGGCTGAGAATAATGTGCTAGATGGAGCTTCAGACTCGAGTTCATTTGTTGTCGGTGACAATATGAACACTATGGATCATAGCATTAATGCACAGACTTTGTCTCATATCCCTCATGGAAGATGA 2226 43.17 MNYICRLDMTHPAEKLIRLMMLFSAVLVAAAAASSDCDRRCGNLEIPYPFGMKEGCYLSNTFLITCNKTHYDPPMAFLEDSNIEVTNISIVNGELHILQYVARNCYKQSGSNYYNEPLLEISMFTISSTKNKFTVIGCDTYAFIDGKLGGENYTSGCMSMCGSISAVRDGPCSGNGCCQLEIPKGLKHLELVVKSFENHTKVLDFNPCGYAFVIQQENFTFSSSYLRNFTRKKVPLVLDWAIPTETCSTVDNKTNCICGPNSKKINFLGERSEYRCQCLEGFEGNPYLSQGCQDIDECENGSHECKFKDGCVNTQGNYTCNCPKNYKGDSRRGGEGCTQNSMSFFLIIIGIGVGFTILVIGSVWLYLGYKKWKFIQQKQKFFQKNGGLMLQQHLSQWQSPADMLRIFTREELEKATNNYNESVVVGKGGFGTVYKGVLDDGSTIAIKKSKLVDRSQTNQFINEVIVLSQINHRNVVRLLGCCLETKVPLLVYEFISNGTLFEHIHDKTKNSSLSWEARLKIASETAGVLSYLHSSASTPIIHRDIKSTNILLDHNLTAKVSDFGASKLVPLDVTQISTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELLTGKKAVSFVGPEAERNLAMYVLCAMKEDRIEEVVEKEMMTEANFEQIKEVARLAKKCVSVKGEERPTMKEVAMELEGLRLMRAEHSWAENNVLDGASDSSSFVVGDNMNTMDHSINAQTLSHIPHGR 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35886736 35889243 - Lag0029157.1 Lac8g1770 617604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1770 741 SUPERFAMILY Protein kinase-like (PK-like) 397 689 IPR011009 -
Lac8g1770 741 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Lac8g1770 741 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524(InterPro)
Lac8g1770 741 CDD STKc_IRAK 425 692 - -
Lac8g1770 741 Gene3D Phosphorylase Kinase; domain 1 383 494 - -
Lac8g1770 741 ProSitePatterns Calcium-binding EGF-like domain signature. 294 320 IPR018097 GO:0005509(InterPro)
Lac8g1770 741 FunFam Wall-associated receptor kinase 2 495 711 - -
Lac8g1770 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1770 741 CDD EGF_CA 294 330 - -
Lac8g1770 741 Gene3D Laminin 244 337 - -
Lac8g1770 741 ProSiteProfiles Protein kinase domain profile. 419 702 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1770 741 SUPERFAMILY EGF/Laminin 293 329 - -
Lac8g1770 741 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 703 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1770 741 Pfam Protein kinase domain 419 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1770 741 FunFam Fibrillin 2 289 333 - -
Lac8g1770 741 FunFam Wall-associated receptor kinase 2 389 494 - -
Lac8g1770 741 Pfam Wall-associated receptor kinase galacturonan-binding 37 97 IPR025287 GO:0030247(InterPro)
Lac8g1770 741 Pfam Calcium-binding EGF domain 294 330 IPR049883 -
Lac8g1770 741 ProSiteProfiles EGF-like domain profile. 294 332 IPR000742 -
Lac8g1770 741 Gene3D Transferase(Phosphotransferase) domain 1 495 712 - -
Lac8g1770 741 SMART egfca_6 294 338 IPR001881 GO:0005509(InterPro)
Lac8g1770 741 SMART serkin_6 419 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1611 Lac-Chr2:14301405 Lac8g1770 Lac-Chr8:35886736 2.80E-204 dispersed
Lac8g1770 Lac-Chr8:35886736 Lac8g1782 Lac-Chr8:36015451 1.90E-306 dispersed
Lac8g1770 Lac-Chr8:35886736 Lac8g1772 Lac-Chr8:35917428 2.20E-185 proximal
Lac2g0017 Lac-Chr2:186975 Lac8g1770 Lac-Chr8:35886736 7.50E-191 transposed
Lac6g1163 Lac-Chr6:11055113 Lac8g1770 Lac-Chr8:35886736 4.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86365 PF00069 Pkinase 2.20E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1770 - - - 0.0