Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1772 ATGGATGAAAGCCTAAATGATTGTGAGAATAAGAACATGTGTATTAACACATTCGGAAACTATACCTGCCATTGTCCTAAGAACTCTAAAGGAGATGGAAGAAAAAGGGGAAAAGGATGCATCCGGGACTATAAGGCCTTCATTCAAACCATCGCGGGATTTGTGGTAGGGTTCACAATTTTAGTGTTGGGCAGCACATGGTTATGCTTGGGTTACGAAAAGTGGAAGCTCATCCAACGAAAGAACAAGTTTTTCATGAAAAATGGAGGCTTGGTGCTTCAACAACATCTTTCTCAGTCGCAATCATCCATGGACATCCTTAGAATTTTCACCGAAGAAGAGTTGAAGAGGGCTACAAACAAGTTCAACGACAGTGCAGTGGTGGGCAAAGGTGGCTACGGTACCGTTTACAAAGGAGTCTTAGACGACGGTTCCATAGTCGCAATCAAGAAATCAAAACTAGTGGACCAATCCCAAACCGACCAATTCATTAACGAAGTCATCGTTCTCTCACAAATCAATCATCGGAATGTGGTGAGACTCTTGGGATGCTGTTTGGAGACGCAAGTTCCATTGTTAGTTTACGAGTTCACAGCCAACGGCACCCTCTTCGAACACATCCACGACAAAGCCAAGCATGCTTCTCTTTCATGGGAAACTCGTTTGAAAATAGCTTCAGAAACTGCCAATGTCCTCTCGTATTTGCATTGTTCAACTTCTACTCCCATTATTCACAGAGATATCAAGTCTTCTAATATACTTTTAGACCAAAATTACACTGCAAAGGTCTCTGATTTCGGAGCTTCAAAACTAGTCCCACTGGATCATACTCAAATAGCCACGATAGTGCAAGGGACTCTTGGATATTTGGATCCAGAATACTTGTTGACAAGTGAGTTGACAGAGAAGAGCGACGTGTACAGCTTTGGAATTGTGCTTTTGGAGCTTATAACCGGGAAGAAGGCCGTGCGTGCTGATGGGCCAGAAGTGGAGAGAAATCTAGCCATATATGTCCTGTGTGCGATGAAAGAAGATCGTTTGGAAGCGGTTGTGGACAAGGGAATGGTAACGGAGGAAAACATTGAGCAGATAAAAGAAGTGGCAAAGCTAGCAAAAGAGTGTGTAGCAGTAAAAGGGGAGGAGCGGCCCACCATGAAGGAGGTAGCTATGGAGTTGGAGGGGCTGAGATTGGAGCAGGTTGAGCATTTCAATATGTTGGATGGAACTTCTTCAGACTCGAGCCAATTTGTTGTTAGTGGCAATATGAGCGCTACGGACCATAGCATAAAGGCTCAGGTTTTGTCTCATATCGTCCATCATGGAAGATGA 1329 43.94 MDESLNDCENKNMCINTFGNYTCHCPKNSKGDGRKRGKGCIRDYKAFIQTIAGFVVGFTILVLGSTWLCLGYEKWKLIQRKNKFFMKNGGLVLQQHLSQSQSSMDILRIFTEEELKRATNKFNDSAVVGKGGYGTVYKGVLDDGSIVAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFTANGTLFEHIHDKAKHASLSWETRLKIASETANVLSYLHCSTSTPIIHRDIKSSNILLDQNYTAKVSDFGASKLVPLDHTQIATIVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVRADGPEVERNLAIYVLCAMKEDRLEAVVDKGMVTEENIEQIKEVAKLAKECVAVKGEERPTMKEVAMELEGLRLEQVEHFNMLDGTSSDSSQFVVSGNMSATDHSIKAQVLSHIVHHGR 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35917428 35919867 - Lag0029159.1 Lac8g1772 617606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1772 442 ProSiteProfiles Protein kinase domain profile. 122 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1772 442 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Lac8g1772 442 FunFam Wall-associated receptor kinase 2 198 415 - -
Lac8g1772 442 CDD EGF 6 34 - -
Lac8g1772 442 SUPERFAMILY Protein kinase-like (PK-like) 99 392 IPR011009 -
Lac8g1772 442 SMART serkin_6 122 400 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1772 442 CDD STKc_IRAK 128 395 - -
Lac8g1772 442 FunFam Wall-associated receptor kinase 2 92 197 - -
Lac8g1772 442 Gene3D Phosphorylase Kinase; domain 1 93 197 - -
Lac8g1772 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1772 442 Gene3D Laminin 1 35 - -
Lac8g1772 442 SUPERFAMILY EGF/Laminin 5 33 - -
Lac8g1772 442 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 404 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1772 442 Pfam Protein kinase domain 124 388 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1772 442 Gene3D Transferase(Phosphotransferase) domain 1 199 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1772 Lac-Chr8:35917428 Lac8g1782 Lac-Chr8:36015451 7.10E-184 dispersed
Lac8g1770 Lac-Chr8:35886736 Lac8g1772 Lac-Chr8:35917428 2.20E-185 proximal
Lac8g1772 Lac-Chr8:35917428 Lac8g1773 Lac-Chr8:35934026 1.30E-166 tandem
Lac5g2552 Lac-Chr5:44089817 Lac8g1772 Lac-Chr8:35917428 2.10E-51 transposed
Lac6g1160 Lac-Chr6:11031548 Lac8g1772 Lac-Chr8:35917428 1.50E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86366 PF00069 Pkinase 3.30E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1772 - - - 0.0