Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1773 ATGAGGCGTCCAATAATGGAGACGCTTATTCAACTCACAGTGGTCAAGATGGCCATTTTATCGGCAGTGGCGGCGACGTCGGCGGCAGCTTCTCAAGCCTTACCCGGGTGCGACGAGTGGTGCGGCGACTTGCAGATTCCATATCCATTCGGCGTTAGAGAAGGGTGTTATCTAAATGAAAACTTCTTCATTGCATGTAATAATACAACTCATTACGATTCTCCAAAGGCATTTCTAGGTGGCGGCAACCTTATGGTTACAAATATATTCATCTCCGGGGAGGTTCAGATTTTGCACTTCGTGGCCCGAGATTGCTACCCCACAAATAACGGCCCCGATCTATCCAGCATCTATCTCTCTGTACCTACGTACACTATTTCCAGTACCAAAAACAAGTTCACCGTCATCGGCTGTGATACTTATGCTTATATTTACGGTCAGGGTCAAACCTACAGAACTGCATGCGTGGCGTTGTGTGATGATATCACCACCGTAAGAGATGGGGCCTGCTCCGGCAATGGGTGCTGTCAATTGGAGATTCCTAATGGCTTAAACTTTTTGGAGTACAAGGTCAGTAGCTTCAACAATCACACTGATGTGACCAGTTTCAATCCTTGTGGGTATGCCTTTTTAATTGAAGAAGACAAGTTCAATTTCTCGTCGAGCTATATCCGCGATTTCCCCCATGAAAGAATTCCATTGGTGCTTGATTGGGCCATTAGTAACAAAACCAATTGTATATGTGGGCCGAATAGTAAAAAAATGAGCTTCCTTGAGGATAGATCTGAATATCGATGCCAGTGCTTGGAAGGCTTTGAAGGGAATCCATATCTCCCTCAAGGTTGTCAAGATGTAGATGAGTGCCAAGACGAAAGGCTTCATGACTGCGCGTATGAGTGTGTTAACACAATAGGAAACTATACTTGCAATTGTCCCAAGGACTTTAAAGGAGATGGAAGACGTGCGGGAGAAGGTTGCACCCGAAACTCCATTTTCGTTCAAGTCATCGTGGGAATTACTGTGGGGTTCATCGTTTTAGTGATTGGGAGTACGTGGTTATACTTTTGTTATAGAAAGTGGAAGTTCATCAAATTGAAAGAGAAGTTTTTTGAGAAAAATGGAGGCTTGATGCTTCAACAGCATCTTTCTCAATGGCAATTATCCACCGACATGGTCAGGATTTTCACCCAAGAGGAGTTGGACAAGGCTACAAACAAGTACGACGAAAGTGCAGTGATTGGAAAAGGTGGGTATGGTACTGTTTATAGAGGAGTCTTAGAGGACGGTTTGGTCGTTGCAATTAAGAAATCAAAATTAGTGGACCAATCCCAAACTTCCCAATTCATTAATGAAGTCATCGTTCTGTCCCAAATCAACCATCGTAATGTAGTCAGGCTCTTAGGATGTTGTTTTGAGACACAGGTTCCATTGTTGGTTTACGAGTTCATCACTAATGGCACACTTTACGAACACCTCCATGAAAAAACCAATCGCGATTCTCTTTCTTGGGAAGCTCGCTTGAGATTAGCTTCGGAAACTGCAGGGGTCGTTTCATATTTGCACTCTTCAGCTTCCACTCCAATTATCCACAGAGATATCAAGACGACTAACATACTTTTAGACGACAATTACACAGCAAAGGTATCTGATTTCGGTGCTTCAAAGTTGGTTCCAATGGATCAAACTCAATTATCCACAATGGTACAAGGGACTCTAGGATATTTAGACCCAGAATACTTGTTGACAAGCGAGTTGACGGAGAAAAGCGACGTGTACAGCTTTGGAATTGTGCTTCTAGAGCTTATAACCGGGAAGAAGGCAGTGAGTTTCGAGGGGCCGGAAGCGGAGAGAAATCTAGCTATGTACGTCCGTTGTGCAATGAAGGAAGATCGTTTGGTAGAAGTTGTGGAGAAGGAAATGGCAACGGAAGCGAACTTTGAACAGATAAAAGAAGCGGCCATGTTAGCAACAAAGTGTTTGAGAATGAGTGGGGAGGAGCGACCCAGCATGAAGGAGGTAGCTATGGAGTTGGAGAGGCTGAGAACGATTGGTTGA 2055 44.14 MRRPIMETLIQLTVVKMAILSAVAATSAAASQALPGCDEWCGDLQIPYPFGVREGCYLNENFFIACNNTTHYDSPKAFLGGGNLMVTNIFISGEVQILHFVARDCYPTNNGPDLSSIYLSVPTYTISSTKNKFTVIGCDTYAYIYGQGQTYRTACVALCDDITTVRDGACSGNGCCQLEIPNGLNFLEYKVSSFNNHTDVTSFNPCGYAFLIEEDKFNFSSSYIRDFPHERIPLVLDWAISNKTNCICGPNSKKMSFLEDRSEYRCQCLEGFEGNPYLPQGCQDVDECQDERLHDCAYECVNTIGNYTCNCPKDFKGDGRRAGEGCTRNSIFVQVIVGITVGFIVLVIGSTWLYFCYRKWKFIKLKEKFFEKNGGLMLQQHLSQWQLSTDMVRIFTQEELDKATNKYDESAVIGKGGYGTVYRGVLEDGLVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLLGCCFETQVPLLVYEFITNGTLYEHLHEKTNRDSLSWEARLRLASETAGVVSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVRCAMKEDRLVEVVEKEMATEANFEQIKEAAMLATKCLRMSGEERPSMKEVAMELERLRTIG 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35934026 35936569 - Lag0029160.1 Lac8g1773 617607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1773 684 SUPERFAMILY Protein kinase-like (PK-like) 385 677 IPR011009 -
Lac8g1773 684 Pfam Protein tyrosine and serine/threonine kinase 411 677 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1773 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1773 684 FunFam Fibrillin 2 279 322 - -
Lac8g1773 684 ProSitePatterns Calcium-binding EGF-like domain signature. 284 309 IPR018097 GO:0005509(InterPro)
Lac8g1773 684 CDD EGF_CA 284 318 - -
Lac8g1773 684 Gene3D Phosphorylase Kinase; domain 1 378 482 - -
Lac8g1773 684 CDD STKc_IRAK 413 680 - -
Lac8g1773 684 FunFam Wall-associated receptor kinase 2 377 482 - -
Lac8g1773 684 Gene3D Laminin 239 326 - -
Lac8g1773 684 ProSiteProfiles Protein kinase domain profile. 407 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1773 684 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 681 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1773 684 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Lac8g1773 684 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Lac8g1773 684 SMART egfca_6 284 327 IPR001881 GO:0005509(InterPro)
Lac8g1773 684 FunFam Wall-associated receptor kinase 2 483 684 - -
Lac8g1773 684 Gene3D Transferase(Phosphotransferase) domain 1 483 683 - -
Lac8g1773 684 Pfam Calcium-binding EGF domain 284 316 IPR049883 -
Lac8g1773 684 SUPERFAMILY EGF/Laminin 283 319 - -
Lac8g1773 684 SMART serkin_6 407 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1773 Lac-Chr8:35934026 Lac8g1782 Lac-Chr8:36015451 1.60E-280 dispersed
Lac8g1772 Lac-Chr8:35917428 Lac8g1773 Lac-Chr8:35934026 1.30E-166 tandem
Lac8g1773 Lac-Chr8:35934026 Lac8g1774 Lac-Chr8:35937397 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86367 PF07714 PK_Tyr_Ser-Thr 1.60E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1773 - - - 0.0