Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1774 ATGGGGCGTCCAATTGAGACGCTTATTCGACTCGCAGTGATGAAGATAGTCATCTTATCGGTGGCTTATGTAGCAGCGGCGGCGGCGGCCTCTCAAGCCTTAGCCGGGTGCGACGAATGGTGTGGCGACTTGCAGATTCCATATCCGTTCGGCACGAGGGAAGGGTGTTATCTGAATGAAGATTTCTTCATCAACTGTAACAAAACTCATTACGATCCTCCAAAGGCATTTCTAGGGAACGGCAACCTCAATGTTACAAATATATCCATCTCCGGAGAGTTCCAAATCTTGCATTTCATGGCCCAAGATTGCTACCCGCGAAATAATGCTCTCGATAATTTGGCCAGCGCCTTTCTCAACTTAGCCCATCACACTGTTTCCAGTACCAAAAACAAGTTCATCGTTATCGGCTGCGATACTTTCTCTTTTATTCGTGGCGTATTCGAGGGGCAAACCTACAGAACTGCATGTGTGGCGTTGTGTGATGACATTGCCACTGTAAGAGATGGGCGCTGCTCTGGCAATGGATGCTGCCAGTTGGAGATTCCCAATGGCCTAACTAATATAGAGTACGAGGTGAGCAGCTTCAATAATCACGTTAATGTGTCGAGCTTCAATCCTTGTGGGTATGCTTTTCTAATCGAAGAAGACAGGTTCAATTTCTCGTCCAAGTATATTCGCAATTTTCCCCAACAGAGAATTCCGTTGGTGGTTGATTGGGCCATTGCTAACAGTACGTGCTCAGCGGCTGAGAACAAAACTAATTGTATATGTGGGCCAAATAGCAGAAAGGTTGACTTCCTCCCCGATGGCTCTAAATATCGTTGCCAGTGCTTGGAAGGCTTCGAGGGGAATCCATATCTCTCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAGGGCTGAATGATTGCACGCATGGGTGTGTTAACAAAGAAGGGAATTATACTTGCAATTGTCCTGAGGGATTTAAAGGAGATGGAAGACGTGGGGGAGAAGGTTGCATCCCAAATTCCAAGTCTTTCGTTCAAATCATCGTCGGAGTGACTGTGGGGTTCGCAGTTTTAGTGATTGGGAGTACATGGTTATACTTGGGCTACAGAAAGTGGAAGTTCATTAAACTGAAAGAGAAGTTCTTTGAGAAAAATGGAGGCTTGATGCTTCAACAGCATCTTTCTCAATGGCAATTATCCACTGACATGGTCAGAATTTTCACCAAAGAGGAGCTGGACAAGGCTACAAACAAGTACGACGAAAGTGCAGTGGTCGGAAAAGGTGGCTACGGAACTGTTTACAAAGGAGTCTTAGACGACGGTTTGGTAGTCGCAATCAAGAAATCAAAATTAGTGGACCAATCCCAAACTTCCCAATTCATTAACGAAGTCATCGTTCTCTCTCAAATCAACCACCGTAACGTGGTAAGGCTCTTGGGGTGTTGTTTAGAGACACAAGTCCCATTGTTGGTGTATGAATTCATCACCAACGGCACACTTTACGACCACATCCATGAAAAAACAAATCGGGATTCTCTTTCATGGGAAGCTCGATTGAGAATAGCTTCGGAAACTGCAGGGGTCATTGCATATTTGCATTCTTCAGCTTCCACTCCAATCATCCACAGAGATATCAAGACAACCAACATACTTTTAGACGATAATTACACAGCAAAGGTCTCTGACTTCGGTGCTTCAAAGTTGGTTCCAGTGGATCAAACTCAATTATCCACAATGGTGCAAGGGACTCTAGGATATTTGGACCCAGAATACTTGTTGACGAGTGAGTTGACAGAGAAGAGCGACGTGTATAGCTTTGGAATTGTACTTCTGGAGCTTATAACTGGGAAGAAAGCGGTGAGTTTCGAGGGGCCGGAGTCGGAGAGGAACCTAGCGATGTACGTCCTGTGTGCAATGAAGGAAGATCGTTTGGTAGAAGTTGTGGAGAAGGGAATGGCGACGAGGGCGAACTTTGAGCAGATAGAGGAAGTGACGAAGTTAGCAACAAAGTGCTTGAGGATAAGTGGGGAGGACCGACCCAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGACTGAGATTGATGATTGGGCATCAATGGGTTAATGACAAAGAGAACGCAGGAGAGATGGTGGCTTATTTGCTGCAGGATGGAGCTTCAGAATCGACATCGAACCAGTTTCTTGTGAGTGGAAGCACAAATGTTGTAGACGACAGCATGAAAGTTCATATTTTGCCACGGATCCATGATGGAAGATGA 2256 45.66 MGRPIETLIRLAVMKIVILSVAYVAAAAAASQALAGCDEWCGDLQIPYPFGTREGCYLNEDFFINCNKTHYDPPKAFLGNGNLNVTNISISGEFQILHFMAQDCYPRNNALDNLASAFLNLAHHTVSSTKNKFIVIGCDTFSFIRGVFEGQTYRTACVALCDDIATVRDGRCSGNGCCQLEIPNGLTNIEYEVSSFNNHVNVSSFNPCGYAFLIEEDRFNFSSKYIRNFPQQRIPLVVDWAIANSTCSAAENKTNCICGPNSRKVDFLPDGSKYRCQCLEGFEGNPYLSQGCQDIDECKDEGLNDCTHGCVNKEGNYTCNCPEGFKGDGRRGGEGCIPNSKSFVQIIVGVTVGFAVLVIGSTWLYLGYRKWKFIKLKEKFFEKNGGLMLQQHLSQWQLSTDMVRIFTKEELDKATNKYDESAVVGKGGYGTVYKGVLDDGLVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLYDHIHEKTNRDSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPVDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPESERNLAMYVLCAMKEDRLVEVVEKGMATRANFEQIEEVTKLATKCLRISGEDRPSMKEVAMELEGLRLMIGHQWVNDKENAGEMVAYLLQDGASESTSNQFLVSGSTNVVDDSMKVHILPRIHDGR 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35937397 35939885 - Lag0029161.1 Lac8g1774 617608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1774 751 CDD EGF_CA 294 328 - -
Lac8g1774 751 SMART serkin_6 418 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1774 751 CDD STKc_IRAK 424 691 - -
Lac8g1774 751 ProSitePatterns Calcium-binding EGF-like domain signature. 294 319 IPR018097 GO:0005509(InterPro)
Lac8g1774 751 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Lac8g1774 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1774 751 Pfam EGF-like domain 304 328 IPR000742 -
Lac8g1774 751 Gene3D Transferase(Phosphotransferase) domain 1 494 710 - -
Lac8g1774 751 FunFam Wall-associated receptor kinase 2 388 493 - -
Lac8g1774 751 Pfam Protein tyrosine and serine/threonine kinase 423 688 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1774 751 Gene3D Plasmodium vivax P25 domain 237 342 - -
Lac8g1774 751 FunFam Wall-associated receptor kinase 2 494 711 - -
Lac8g1774 751 SUPERFAMILY EGF/Laminin 293 329 - -
Lac8g1774 751 SMART egf_5 297 337 IPR000742 -
Lac8g1774 751 SMART egf_5 246 293 IPR000742 -
Lac8g1774 751 ProSiteProfiles EGF-like domain profile. 294 328 IPR000742 -
Lac8g1774 751 SMART egfca_6 294 337 IPR001881 GO:0005509(InterPro)
Lac8g1774 751 SUPERFAMILY Protein kinase-like (PK-like) 396 688 IPR011009 -
Lac8g1774 751 Pfam Wall-associated receptor kinase galacturonan-binding 37 92 IPR025287 GO:0030247(InterPro)
Lac8g1774 751 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524(InterPro)
Lac8g1774 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 705 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1774 751 FunFam Fibrillin 2 289 332 - -
Lac8g1774 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Lac8g1774 751 ProSiteProfiles Protein kinase domain profile. 418 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1208 Lac-Chr12:16909198 Lac8g1774 Lac-Chr8:35937397 9.20E-36 dispersed
Lac2g0017 Lac-Chr2:186975 Lac8g1774 Lac-Chr8:35937397 1.30E-187 dispersed
Lac8g1774 Lac-Chr8:35937397 Lac8g1782 Lac-Chr8:36015451 2.90E-294 dispersed
Lac8g1774 Lac-Chr8:35937397 Lac8g1776 Lac-Chr8:35972135 1.50E-282 proximal
Lac8g1773 Lac-Chr8:35934026 Lac8g1774 Lac-Chr8:35937397 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86368 PF07714 PK_Tyr_Ser-Thr 9.50E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1774 - - - 0.0