Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1776 ATGAGACGTTCAACAAAGACGACGCTGGTACCACTCATGGTGATGAAGATAGCCATGTTGTCAACAGCCTTGGCCGTAGTAGCTTCTCAAGCCTTACCCGGCTGCGACGAATGGTGTGGCGACCTGCAAATTCCATATCCATTTGGCACGAGAGAAGGGTGTTATCTCAATGAAACTTTCTCAATTACTTGCAACGAAAACGATAGCAATAAACCTCCAAAGGCGTTTCTAAAGAACACCAACATCAGCGTTACCAATATATCTATGGATGGTGAGCTCCACATCTTGCAGCCCATAGTGCGAGATTGCATCAAGCCAGTAGCTGGTCCTTTTGTTCCCAACCTAACCAACCTTTCGGTGCCGGCCATGTTCCCAATTGCTGATGGCAAAAACAAGTTCACGACCATCGGCTGCGATGCTTTGGGTTTAGTCGTCGGGGTGCTCAACGGGAGTGATTATGCAAGTGGGTGTATTTCAATGTGTTTCAACAATAGTAATATAAATAATGGGACTTGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCAAATGGGTTGAGGGATTTGACTTTGCAGGTGAGTACCGTCTTGAATTACACTCTTGCACCAAATTTCAGTTCCTGTGGGTATGCTTTTGTAACCGGAGATGAGGGGTTCGAGTTTTCGTCAACTTATGTTGAGAATTTTGAAGATGAGGAAGTTGAGGTTGTGGTTGGTTGGGCCATTGGAAACGAAACAAAAAATGTATGTGGATCAAACAGCATAAGCAATAGTAGCTTCTCTGGTGATGGATCTGAATATCGTTGCCAATGTTGGGATGGTTTTGAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATATAGATGAATGCAAGGATGAAACGCTAAATGATTGTATGTACAAGAACAAGTGTGTTAACACAATAGGAAACTATACCTGCAATTGTCCCAAGAACTTTAAAGGAGATGGAAGACGTGGGGGAGAAGGTTGCATCCGAGATTCCAAGACAATTCCGATCATCATCGGTACTGCGGTAGGGTTCACAGTTTTACTAATTGGCAGCATCTGGATATACTTGGGTTACAAAAAATGGAAGTTCATCAAACAGAAAGAGGAATTTTTCCAGAAAAATGGAGGGTTCATACTTCAACGACAGCTTTCTCAATGGCAATCGCCGAATGAGATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCCACCAACAACTACGACCACACCACTATTGTCGGCAAAGGTGGCTTTGGCACCGTTTACAAAGGAGTCTTGGACGATGGTCTAACCGTTGCTATCAAGAAATCTAAATTCGTGGACCAATCTCAAACCGCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTTAGGCTCTTGGGGTGTTGTTTGGAGACACAGGTTCCACTGTTGGTCTACGAGTTCATCACCAATGGCACACTCTTTGATCACATCCACGACAAAACCAAAAAGGTTTCCCTTTCTTGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCAGGCGTCCTTTCGTATTTGCATTCTTCGGCTTCTACTCCCATCATCCACAGAGATATCAAGACCACTAACATACTTTTAGACGACAATTACACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCTTTGGATCAAACTCAGCTATCTACATTGGTGCAAGGGACTCTTGGATATCTAGACCCTGAATACTTACTGACAAGTGAGTTGACGGAGAAAAGTGATGTGTACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACTGGAAAGAAGGCGGTGAGTTTTGGTGGACCAGAAGAAGAGAGAAATCTAGCCACGTATGCCCTGTGTGCAATGAAAGAAGAGCGCTTGGAAGAAGTTATAGAGATGGGACTAGTGAGAGAGGAGAACTTCGAGCAAATAAAAGAAGTAGCTAAGCTAGCGGGAAGTTGTTTAAGAATCAAAGGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAGGGACTGCGAGTGATGAAAGTTGAGCCTTCATGGGTGAATAAGAATTTAGCCAACGCAGAAGAGACGGTATATTTGCTGGATGGAGCTTCGGACTCGAGCCAATTTGTTGTGAGTGGCAGTATGAATACTGCGGGCGACAGCATGAAAGCTCGAATTTTGTCTCATATCGACTATGGAAGATGA 2232 44.31 MRRSTKTTLVPLMVMKIAMLSTALAVVASQALPGCDEWCGDLQIPYPFGTREGCYLNETFSITCNENDSNKPPKAFLKNTNISVTNISMDGELHILQPIVRDCIKPVAGPFVPNLTNLSVPAMFPIADGKNKFTTIGCDALGLVVGVLNGSDYASGCISMCFNNSNINNGTCSGNGCCQLEIPNGLRDLTLQVSTVLNYTLAPNFSSCGYAFVTGDEGFEFSSTYVENFEDEEVEVVVGWAIGNETKNVCGSNSISNSSFSGDGSEYRCQCWDGFEGNPYLPQGCQDIDECKDETLNDCMYKNKCVNTIGNYTCNCPKNFKGDGRRGGEGCIRDSKTIPIIIGTAVGFTVLLIGSIWIYLGYKKWKFIKQKEEFFQKNGGFILQRQLSQWQSPNEMVRIFTQEELEKATNNYDHTTIVGKGGFGTVYKGVLDDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLFDHIHDKTKKVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPLDQTQLSTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFGGPEEERNLATYALCAMKEERLEEVIEMGLVREENFEQIKEVAKLAGSCLRIKGEERPSMKEVAMELEGLRVMKVEPSWVNKNLANAEETVYLLDGASDSSQFVVSGSMNTAGDSMKARILSHIDYGR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 35972135 35975580 + Lag0029163.1 Lac8g1776 617610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1776 743 Pfam Protein tyrosine and serine/threonine kinase 417 682 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1776 743 FunFam Fibrillin 2 282 327 - -
Lac8g1776 743 FunFam Wall-associated receptor kinase 2 382 487 - -
Lac8g1776 743 CDD STKc_IRAK 418 685 - -
Lac8g1776 743 ProSitePatterns Calcium-binding EGF-like domain signature. 287 314 IPR018097 GO:0005509(InterPro)
Lac8g1776 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1776 743 SMART egfca_6 287 332 IPR001881 GO:0005509(InterPro)
Lac8g1776 743 ProSiteProfiles Protein kinase domain profile. 412 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1776 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Lac8g1776 743 SUPERFAMILY EGF/Laminin 286 324 - -
Lac8g1776 743 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Lac8g1776 743 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Lac8g1776 743 CDD EGF_CA 287 323 - -
Lac8g1776 743 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524(InterPro)
Lac8g1776 743 SMART serkin_6 412 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1776 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 696 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1776 743 Gene3D Phosphorylase Kinase; domain 1 378 487 - -
Lac8g1776 743 Gene3D Transferase(Phosphotransferase) domain 1 488 702 - -
Lac8g1776 743 Gene3D Laminin 244 331 - -
Lac8g1776 743 Pfam Wall-associated receptor kinase galacturonan-binding 35 91 IPR025287 GO:0030247(InterPro)
Lac8g1776 743 Pfam Calcium-binding EGF domain 287 321 IPR049883 -
Lac8g1776 743 FunFam Wall-associated receptor kinase 2 488 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1776 Lac-Chr8:35972135 Lac8g1781 Lac-Chr8:36002301 0.00E+00 dispersed
Lac8g1774 Lac-Chr8:35937397 Lac8g1776 Lac-Chr8:35972135 1.50E-282 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86369 PF00069 Pkinase 6.20E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1776 - - - 0.0