Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1781 ATGAGACGTTCAACAAAGACGACGCTCGTACCACTGATGGTGATGAAGATAGCCATGTTCTCAACAGCCTTGGCCGCAGTAGCTTCTCAAGCCTTACCCGGCTGCGACGAATGGTGTGGCGACGTGCAAATTCCATATCCATTTGGCACGAGAGAAGGGTGTTATCTCAATGAAACTTTCTCGATTACTTGCAACAAAAACGATAGCAATAAACCTCCAAAGGCGTTTCTAAAGAACACCAACATCAGCGTTACCAATATATCCATCGTCGATGGTGAGCTCCACATCTTGCAGCCCATAGTGCGAGAATGTCGCAGGGCAGTAGCTGGTCCTTTTGTTCCCAACACAACCAATCTTTCGGTGCAGGCCATGTTCCCAGTTGCTGATGCCAAAAACAAGTTCATTGCCATCGGCTGCGATACAATCGGTGTAATTGTCGGGATGCTAAACGGGAGTGATTATGGAAGTGGGTGTGTTTCGATGTGTTTCAGCAATAGTACTATAAATGATGGGACGTGCTCTGGCATTGGGTGCTGTCAGTTGGAGATTCCGAATGGGTTGAGGAATATGAGTTTGGCGGTGGGTGCCTTCTTGAATTACACTCTTGCACCAAATTCCAGTTCCTGTGGGTATGCTTTTGTAACCGGAGATGAGGGGTTCGAGTTTTCGTCAACTTATATTGAGAGTTTTGAAGATGAGGAAGTTGAGGTTGTGGTTGGTTGGGCCATTGGAAACGAAACAAAAAATGTATGTGGACCAAACAGCAAAAGGAATAGTAGCTTCTCTGATGATGGATCTGAATATCGTTGCCAATGCTTGGATGGTTTCGAGGGGAATCCATATCTCCCTCAAGGTTGCCAAGATATTGAAGAATGCAAGGATGAAAGGCGAAATGATTGTATATACAAGAACAAGTGTATTAACACAATAGGAAACTATACCTGCAATTGTCCTAACCACTTTAAAGGAGATGGAAGACATGGGGGAGAAGGTTGTGTCCGAGATTCCAAGACAATTCCGATCATCATCGGAATTGGGGTAGGGTTCGTAGTCTTACTAATTGGCAGCACATGGATATACTTGTGTTACAAAAAGCGGAAGTTCATCAAACAGAAAGAGGAATTTTTCCAGAAAAATGGAGGGTTCATACTTCAACGACAGCTTTCTCAATGGCAATCGCCGAATGAGATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCCACCAACAACTACGACCACACCACTATTGTCGGCAAAGGTGGCTTTGGCACCGTTTACAAAGGAGTCTTGGACGATGGTCTAACCGTTGCTATCAAGAAATCTAAATTCGTGGATCAATCTCAAACCGCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTTAGGCTCTTGGGGTGTTGTTTGGAGACACAGGTTCCACTGTTGGTCTACGAGTTCATCACCAATGGCACACTTTTTTATCACATCCACGACAAAACCAAAAAGGTTTCCCTTTCTTGGGAAGCTCGCTTGAAAATAGCTTTGGAAACTGCAGGCGTCCTTTCGTATTTGCATTCTTCGGCTTCTACTCCCATCATCCACAGAGATATCAAGACCACTAACATACTTTTAGACGACAATTACACTGCAAAGGTCTCTGATTTCGGTGCTTCAAAGTTGGTTCCTTTGGATCAAACTCAGATATCTACATTGGTGCAAGGGACTTTGGGATATCTAGACCCTGAGTACTTACTGACAAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTCGGAATTGTGCTTCTAGAGCTTATAACTGGGAAGAAGGCGGTGAGTTTCAATGGGCCAGAAGAAGAGAGAAATTTGGCGGTGTATGTCCTGTGTGCAATGAAAGAAGATCGGTTGGAAGAAGCTGTGGAGATGGGAATGGCGAGAGAGGCAAATTTTGAGCAGATAAAAGAAGTGGCTGAGCTAGCAAAAAAGTGTTTAAGAATCAAAGGGGAGGAGCGACCCAGCATGAAGGAAGTAGCTATGGAGTTGGAAGGACTGCGAGTAATGAAGGTGGAGCATTCATGGACGAATAATACTAATTTATCCAACACAGAAGAGATGGTATGTTTGTTGGATGGAACTTCAGATTCGAGCCAATTTGTTGTGAGTGGCAGTATGAATATTGTGGGCGATAGCATAAAAGCTCGAATTATGTCACCTATCGACCATGGAAGATGA 2238 44.15 MRRSTKTTLVPLMVMKIAMFSTALAAVASQALPGCDEWCGDVQIPYPFGTREGCYLNETFSITCNKNDSNKPPKAFLKNTNISVTNISIVDGELHILQPIVRECRRAVAGPFVPNTTNLSVQAMFPVADAKNKFIAIGCDTIGVIVGMLNGSDYGSGCVSMCFSNSTINDGTCSGIGCCQLEIPNGLRNMSLAVGAFLNYTLAPNSSSCGYAFVTGDEGFEFSSTYIESFEDEEVEVVVGWAIGNETKNVCGPNSKRNSSFSDDGSEYRCQCLDGFEGNPYLPQGCQDIEECKDERRNDCIYKNKCINTIGNYTCNCPNHFKGDGRHGGEGCVRDSKTIPIIIGIGVGFVVLLIGSTWIYLCYKKRKFIKQKEEFFQKNGGFILQRQLSQWQSPNEMVRIFTQEELEKATNNYDHTTIVGKGGFGTVYKGVLDDGLTVAIKKSKFVDQSQTAQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFITNGTLFYHIHDKTKKVSLSWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPLDQTQISTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFNGPEEERNLAVYVLCAMKEDRLEEAVEMGMAREANFEQIKEVAELAKKCLRIKGEERPSMKEVAMELEGLRVMKVEHSWTNNTNLSNTEEMVCLLDGTSDSSQFVVSGSMNIVGDSIKARIMSPIDHGR 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36002301 36005558 + Lag0029168.1 Lac8g1781 617615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1781 745 SMART egfca_6 288 333 IPR001881 GO:0005509(InterPro)
Lac8g1781 745 ProSiteProfiles EGF-like domain profile. 288 327 IPR000742 -
Lac8g1781 745 SMART serkin_6 413 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1781 745 CDD EGF_CA 288 324 - -
Lac8g1781 745 Pfam Wall-associated receptor kinase galacturonan-binding 35 96 IPR025287 GO:0030247(InterPro)
Lac8g1781 745 SUPERFAMILY Protein kinase-like (PK-like) 391 684 IPR011009 -
Lac8g1781 745 Gene3D Phosphorylase Kinase; domain 1 379 488 - -
Lac8g1781 745 Gene3D Transferase(Phosphotransferase) domain 1 489 708 - -
Lac8g1781 745 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524(InterPro)
Lac8g1781 745 CDD STKc_IRAK 419 686 - -
Lac8g1781 745 FunFam Wall-associated receptor kinase 2 383 488 - -
Lac8g1781 745 SUPERFAMILY EGF/Laminin 287 324 - -
Lac8g1781 745 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Lac8g1781 745 FunFam Wall-associated receptor kinase 2 489 707 - -
Lac8g1781 745 ProSiteProfiles Protein kinase domain profile. 413 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1781 745 Gene3D Laminin 245 333 - -
Lac8g1781 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 697 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1781 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1781 745 Pfam Protein tyrosine and serine/threonine kinase 418 683 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1781 745 ProSitePatterns Calcium-binding EGF-like domain signature. 288 315 IPR018097 GO:0005509(InterPro)
Lac8g1781 745 FunFam Fibrillin 2 283 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1985 Lac-Chr1:41423375 Lac8g1781 Lac-Chr8:36002301 2.50E-81 dispersed
Lac3g1792 Lac-Chr3:18775165 Lac8g1781 Lac-Chr8:36002301 8.00E-101 dispersed
Lac8g1776 Lac-Chr8:35972135 Lac8g1781 Lac-Chr8:36002301 0.00E+00 dispersed
Lac8g1781 Lac-Chr8:36002301 Lac8g2932 Lac-Chr8:46347207 4.70E-79 dispersed
Lac8g1781 Lac-Chr8:36002301 Lac8g1782 Lac-Chr8:36015451 4.00E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86370 PF00069 Pkinase 2.70E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1781 - - - 0.0