Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1782 ATGGGGCGTACAACGGAGACGCTTGTGCGACTCATGGTTGTGAACATAGCCATTTTGTCAGTGGCCGTGGCAGCGTCAGTTGCTTCTCATTCTCTAGCCAAACCCGGTTGCAATGATAAGTGTGGAGACTTGACGATTCCTTATCCATTCGGGATGAGCCCAGAATGTTATCTCAATATAAATTTCTCCATTACCTGCAAGACCACTCATGATCAACCTCCGCAGGCATTTCTGATGAAGAGCAACATTTTTGTTACCAATATATCCATCCTCGACGGCGAGATTCACATCTTGCAGTACGTTGCCCGAGATTGCTACACAAAAGATGATAAGTTCAGGAATAGACCCTCTCTAACGGTGCCTATGTTCACCATTTCCAACACGAAGAACAAGTTCACCGTCATCGGCTGCGATACTTACGCTTATATTAAAGGCCAACTTGAGGGAGAATTTTATACAAGTGGGTGTATGGCGTTCTGTGCAAACAATAGAACTAGAGTTATAACAGAAGCTTCTGGGTCCTGCTCCGGCAATGGGTGCTGTCAGTTGGAGATTCCCAATGGCCTAAAAAATTTGGAGTTGGAGGTGGCAAGCTTCAAAAATCACACTGAGGTACTCGACTTCAATCCCTGTGGATATGCCTTTGTAATCCAACAAGACAACTTCACTTTCTCCTCCAAATATTTGAGTGAATTTAAGGAAGAGAAAGTTCCACTGGTGCTTGATTGGAGCATCAAAAATGATACTTGCTCAACAGATAACATCACAGACAATTGCCTATGTGGACTATACAGCAAAAGGAATAATAGCTTCTCCCTTGATGGATCGGAATATCATTGCCAGTGTTTGGAAGGTTTCGAGGGGAATCCATATCTCCCTCAAGGTTGTCAAGATATTGATGAATGCGAAATTGGAACTCATAAATGTGAAACCAAACAGCAGTGTATTAACACACTGGGAAACTATACCTGCTATTGTCCTGAGAACTATCAAGGAGATGGAAGGCGTGAGGGAAAAGGTTGCACCAAAATCTCCAAGTCTTGGATTCAAATCATCATCGGAATTGGGGTGGGGTTCGTAGTTTTACTGATCGGCAGCACATGGTTATACTTTGGTTACAAAAAGTGGAAGTTCATCCAACAGAAAGACAAGTTTTTCAAGAAAAATGGAGGCCTCATGCTTCGACAACACCTTTCTCAGTGGCAATCACCCGTTGACACAGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAAGCTACAAACAAGTTCGACGAAAGCACAGTGGTAGGAACAGGTGGCTACGGCACTGTTTACAAAGGAATCTTAGATGGTGGTTTGGCTGTCGCAATTAAGAAATCAAAATTAGTGGACCAATCTCAAATCTCCCAATTCATCAACGAAGTCATTGTTTTATCCCAAATCAACCATCGACACGTGGTGAGGCTGTTAGGGTGTTGTTTGGAGACGCAAGTTCCATTGTTGGTGTACGAGTTCATCACCAACGGCACACTCTTTGACCACATCCATGACAGAACCAACTATGCTTACCTTTCATGGGAAACTCGCTTGAAAATAGCTTCTGAAACTGCAGGCGTTGTTTCATACTTGCATTCTTCCGCTTCCATTCCAATTATCCACAGAGATATCAAGCCCACTAACATACTTTTGGACGACAATTATACTGCAAAGGTCTCTGATTTCGGTGCTTCGAAGTTGGTTCCGATGGATCAAACTCAACTATCTACGATGGTGCAAGGGACTCTTGGATATTTGGATCCCGAATACTTGTTAACGAGTGAGTTGACGGAGAAGAGTGATGTGTACAGCTTTGGAATTGTGCTTCTGGAGCTTATAACAGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGCAGAGAGGAATCTGGCCATGTACGTGCTTTGTGCAATGAAAGAAGATCGTTTAGGAGAAGTTGTGGAGAAGGAAATGGCGACAGAAGGTAACTTTGATCAGATAAAAGAAGTTGCAAAACTAGCAAAAGAGTGTGTGAGAGTGAAAGGGGAGGAGCGACCAAGCATGAAGGATGTAGCAATGGAGTTGGAGGGACTGAGAGTGATGCAGGTCGAACATTCATGGGCTAAGAACGATTCATCCAATGCAGAAGAGTTGATAAATTTGTTGGATGAAGCATCAGAGTCGAGCCAATTTGTTGTTAGCGGCAGTATCAATGCTATGGACAATAGCATAAAGGCTCAGGTTTTGATACATATCCCTGATGCAAGATGA 2265 43.4 MGRTTETLVRLMVVNIAILSVAVAASVASHSLAKPGCNDKCGDLTIPYPFGMSPECYLNINFSITCKTTHDQPPQAFLMKSNIFVTNISILDGEIHILQYVARDCYTKDDKFRNRPSLTVPMFTISNTKNKFTVIGCDTYAYIKGQLEGEFYTSGCMAFCANNRTRVITEASGSCSGNGCCQLEIPNGLKNLELEVASFKNHTEVLDFNPCGYAFVIQQDNFTFSSKYLSEFKEEKVPLVLDWSIKNDTCSTDNITDNCLCGLYSKRNNSFSLDGSEYHCQCLEGFEGNPYLPQGCQDIDECEIGTHKCETKQQCINTLGNYTCYCPENYQGDGRREGKGCTKISKSWIQIIIGIGVGFVVLLIGSTWLYFGYKKWKFIQQKDKFFKKNGGLMLRQHLSQWQSPVDTVRIFTQEELEKATNKFDESTVVGTGGYGTVYKGILDGGLAVAIKKSKLVDQSQISQFINEVIVLSQINHRHVVRLLGCCLETQVPLLVYEFITNGTLFDHIHDRTNYAYLSWETRLKIASETAGVVSYLHSSASIPIIHRDIKPTNILLDDNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEAERNLAMYVLCAMKEDRLGEVVEKEMATEGNFDQIKEVAKLAKECVRVKGEERPSMKDVAMELEGLRVMQVEHSWAKNDSSNAEELINLLDEASESSQFVVSGSINAMDNSIKAQVLIHIPDAR 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36015451 36018084 + Lag0029169.1 Lac8g1782 617616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1782 754 SMART egf_5 301 342 IPR000742 -
Lac8g1782 754 SMART egf_5 249 297 IPR000742 -
Lac8g1782 754 Pfam Calcium-binding EGF domain 298 334 IPR049883 -
Lac8g1782 754 ProSitePatterns Calcium-binding EGF-like domain signature. 298 324 IPR018097 GO:0005509(InterPro)
Lac8g1782 754 Gene3D Transferase(Phosphotransferase) domain 1 499 719 - -
Lac8g1782 754 FunFam Wall-associated receptor kinase 2 499 716 - -
Lac8g1782 754 SMART serkin_6 423 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1782 754 CDD EGF_CA 298 333 - -
Lac8g1782 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1782 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Lac8g1782 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 707 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac8g1782 754 Pfam Protein kinase domain 425 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1782 754 SMART egfca_6 298 342 IPR001881 GO:0005509(InterPro)
Lac8g1782 754 SUPERFAMILY EGF/Laminin 297 333 - -
Lac8g1782 754 FunFam Fibrillin 2 293 337 - -
Lac8g1782 754 CDD STKc_IRAK 429 696 - -
Lac8g1782 754 FunFam Wall-associated receptor kinase 2 393 498 - -
Lac8g1782 754 ProSitePatterns Protein kinases ATP-binding region signature. 429 452 IPR017441 GO:0005524(InterPro)
Lac8g1782 754 Pfam Wall-associated receptor kinase galacturonan-binding 37 97 IPR025287 GO:0030247(InterPro)
Lac8g1782 754 Gene3D Laminin 246 341 - -
Lac8g1782 754 SUPERFAMILY Protein kinase-like (PK-like) 401 694 IPR011009 -
Lac8g1782 754 Gene3D Phosphorylase Kinase; domain 1 395 498 - -
Lac8g1782 754 ProSiteProfiles Protein kinase domain profile. 423 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1782 754 ProSiteProfiles EGF-like domain profile. 298 333 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1770 Lac-Chr8:35886736 Lac8g1782 Lac-Chr8:36015451 1.90E-306 dispersed
Lac8g1772 Lac-Chr8:35917428 Lac8g1782 Lac-Chr8:36015451 7.10E-184 dispersed
Lac8g1773 Lac-Chr8:35934026 Lac8g1782 Lac-Chr8:36015451 1.60E-280 dispersed
Lac8g1774 Lac-Chr8:35937397 Lac8g1782 Lac-Chr8:36015451 2.90E-294 dispersed
Lac8g1782 Lac-Chr8:36015451 Lac8g2932 Lac-Chr8:46347207 9.20E-75 dispersed
Lac8g1781 Lac-Chr8:36002301 Lac8g1782 Lac-Chr8:36015451 4.00E-280 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86371 PF00069 Pkinase 4.30E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1782 - - - 0.0