Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1821 ATGTCCGCCCATAATCGCCGCCCGTCGTTCTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCTTCCTCGTCCGACAATGTCGGGAAGGTTATGGCGGTTCCGCCACACTTGGCGAAGAAGCGAGCTCCACTTGGTAACCTGACGAATCTTAGGAATGTGTCTCATAGTGCGGCGAAAAGCTCTGTTCCGCCTGCTGTTATGGTACCTTGTGCAACCAAAGCTGTCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGTAGCTCGAACTTGCCAGCGAACAATACAACCACATTGCTCGATGTCAAAACTACAAGTGCAGTTGCCCCTAGCAATGTTACAGCTTTCTCGAGAACTGATGCCACCGCCATTTCTAGTTGTATGGATGTCTCTCCGACTAAATCAGATGGAGTTTCAGTTTCTTTAGATGAAACTATGTCTACTTGTGATTCTTTCAAGAGTCCCGATGTCGAGTACATGGATAATAATGATGTTCCAGCAGTTGATTCCGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCATGCACCAATTAATAGTCAGGCACCAATTAAAGGTAGTATATGCAATAGAGATGTACTTGCAGAAATGGAAACAGATGGTGATATCATTGATGTCGATACCGATTTCATGGATCCCCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCGTCTGAGGCAAAGAAAAGGCCTTCTACAGACTTCATGGAAAAAATTCAGAAGGATATAAATTCAAATATGCGTGCTATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGATACTCTTTATTTGACAGTGAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTATATAACTGATAACACATATTTCAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGACGATTTGTTCGTGCTGCTCAAGGTGCCGATGAGCTTTCATCAATGCAGTTGGAGTGCTTGTCCAACTTCCTTGCTGAATTATCTCTTTTAGAATATGGCATGCTCTGCTACGCCCCGTCGCTCGTCGCTGCCTCGGCGATTTTCTTGGCGAAGTTCATTCTTCTCCCAACTAAGAGACCATGGAACTCCACCTTGCAGCATTATACACATTATCAACCGTCCGATCTCGTCGACTGCGTTAAAGATTTACATCGTCTCTGCTGTAACCATAATTCTAGCTTACCTGCTATCAGAGAGAAATACAGCCAGCATAAGTACAAACACGTGGCGAAGAAGTACTGCCCTCCGGCGATACCACCGGAGTTCTTCCAGAATCAAACACAGTAG 1500 44.47 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNLRNVSHSAAKSSVPPAVMVPCATKAVKARKSSPARTRSSNLPANNTTTLLDVKTTSAVAPSNVTAFSRTDATAISSCMDVSPTKSDGVSVSLDETMSTCDSFKSPDVEYMDNNDVPAVDSVERKTKSSLCISGHAPINSQAPIKGSICNRDVLAEMETDGDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGADELSSMQLECLSNFLAELSLLEYGMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNHNSSLPAIREKYSQHKYKHVAKKYCPPAIPPEFFQNQTQ 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36495788 36498796 - Lag0029208.1 Lac8g1821 617655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1821 499 Gene3D - 235 482 - -
Lac8g1821 499 MobiDBLite consensus disorder prediction 1 34 - -
Lac8g1821 499 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Lac8g1821 499 CDD CYCLIN_AtCycA-like_rpt2 364 477 - -
Lac8g1821 499 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Lac8g1821 499 FunFam Mitotic cyclin 6 249 349 - -
Lac8g1821 499 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Lac8g1821 499 Pfam Cyclin, C-terminal domain 364 483 IPR004367 -
Lac8g1821 499 PIRSF Cyclin_A_B_D_E 5 493 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lac8g1821 499 PANTHER CYCLINS 217 474 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac8g1821 499 MobiDBLite consensus disorder prediction 1 32 - -
Lac8g1821 499 FunFam Cyclin A1 351 482 - -
Lac8g1821 499 SUPERFAMILY Cyclin-like 364 487 IPR036915 -
Lac8g1821 499 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Lac8g1821 499 SMART cyclin_7 368 456 IPR013763 -
Lac8g1821 499 SMART cyclin_7 271 355 IPR013763 -
Lac8g1821 499 SMART Cyclin_C_2 364 486 IPR004367 -
Lac8g1821 499 Gene3D - 249 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0195 Lac-Chr12:2145644 Lac8g1821 Lac-Chr8:36495788 2.10E-66 dispersed
Lac13g1302 Lac-Chr13:11999476 Lac8g1821 Lac-Chr8:36495788 5.20E-13 dispersed
Lac2g0633 Lac-Chr2:4734814 Lac8g1821 Lac-Chr8:36495788 6.70E-80 dispersed
Lac6g0270 Lac-Chr6:2177378 Lac8g1821 Lac-Chr8:36495788 9.80E-78 dispersed
Lac6g1238 Lac-Chr6:12008772 Lac8g1821 Lac-Chr8:36495788 2.70E-69 dispersed
Lac8g1040 Lac-Chr8:21490163 Lac8g1821 Lac-Chr8:36495788 4.00E-07 dispersed
Lac8g1821 Lac-Chr8:36495788 Lac9g2754 Lac-Chr9:45728656 7.80E-46 dispersed
Lac8g1821 Lac-Chr8:36495788 Lac2g0367 Lac-Chr2:2751758 2.10E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1821 K06627 - csv:101221569 918.302