Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g1824 | ATGGCAAGTCGGCAGAAGGAAGCTCAGATGAGTACGGCGGCGACACCGTCTTTTGGAGGTGGCAGCAACCGCATAGCGGCGGTGACGACCACTCCGGCCAACGCCGTCAAGCCACAAAATCACCAAGAAGAACAAACCACCACCCATCAGAAACCTGGATGGAGAAAATTTCTTTCTCACGTTGGCCCCGGCTTCCTCGTCTCATTGGCTTACCTTGATCCCGGCAACTTGGAAACCGATCTGCAGGCTGGAGCTAATCACGGATACGAGCTTTTGTGGGTGGTGCTTATTGGATTAATATTTGCGCTTATAATCCAATCTCTCGCTGCAAATCTCGGCGTAAGCACTGGAAAACACCTTTCAGAAGTCTGCAAAGCCGAATATCCCAAATTTGTGAAGTACTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCAGAAGTGATAGGAACGGCCTTTGCCCTGAATATACTATTCCATATTCCAGTTTGGGCTGGAGTTCTTCTCACCGGATTAAGCACCCTCTCGCTCCTTGGACTCCAGAGATATGGGGCAAGGAAGCTGGAATTGCTGATAGCAGTTTTGGTATTCGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGTTACGTTAAGCCGCCGGCGACCGGCGTTTTGAAAGGAATGTTTGTGCCCAAACTCAACGGCCAAGGAGCCACCGCCGACGCCATTGCTCTCCTCGGCGCTCTCGTTATGCCGCACAATCTCTTTCTTCATTCGGCTCTCGTGCTCTCTAGGAAAGTGCCAAATTCCGTCCGTGGTATCAACGACGCGTGCAGGTACTTCCTAATAGAGAGCGGATTTGCACTGTTGGTAGCATTTTTAATAAACGTGGCCGTCGTTTCAGTTTCCGGCACCGTTTGTACCGTCGGAAAAATCTCCGAAACCACCGCCGATCAGTGCTCCGACATAACCCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCGAGCTCCACTATTTACGCCATTGCGTTGCTCGCCTCTGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGACAATTCATCATGCAGGGGTTTTTGGACTTGAAAATGAAAACTTGGGTGAGGAACCTTATGACGAGGTCCATTGCCATTACGCCCAGTCTCATTGTCGCCATTATCGGTGGACCTCAAGGAGCTGGACGTCTCATCATTATTGCTTCGATGATTCTATCCTTCGAGCTCCCATTCGCTCTAATTCCGCTACTCAAATTCAGCAGCAGCAGCACGAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCATGGATATTGGGCCTGGGAATCATCGGCATCAACATCTATTATCTGAGTACGGGCTTCGTGGGCTGGCTAATCGACAACGATTTACCAAAAGTTGCAAATGTATTCATTGGGATCGTTGTGTTTCCATTGATGGCCATCTACATTCTTGCCGTTATTTACCTGACGTTTCGAAAGGACAGGGTTGTCACTTACATTGAGCCCGAAAAGCACGACCCTATGGCCCAAGCCCATTTGGAAAGTGGGCTGAGTAATTCTTTTGGGCCTGGTGACGTCGCCCCGGTTCCTTTCAGAGAGGACTTGGCCCATATCCCACTTCCCGAGTAG | 1662 | 50.12 | MASRQKEAQMSTAATPSFGGGSNRIAAVTTTPANAVKPQNHQEEQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPKFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLSLLGLQRYGARKLELLIAVLVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATADAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALLVAFLINVAVVSVSGTVCTVGKISETTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWVRNLMTRSIAITPSLIVAIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIDNDLPKVANVFIGIVVFPLMAIYILAVIYLTFRKDRVVTYIEPEKHDPMAQAHLESGLSNSFGPGDVAPVPFREDLAHIPLPE | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 36534364 | 36540596 | + | Lag0029211.1 | Lac8g1824 | 617658 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g1824 | 553 | Hamap | Divalent metal cation transporter MntH [mntH]. | 47 | 465 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | MobiDBLite | consensus disorder prediction | 33 | 52 | - | - | |
| Lac8g1824 | 553 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 40 | 512 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 239 | 262 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 377 | 394 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 349 | 368 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 189 | 210 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 409 | 428 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 136 | 162 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | PRINTS | Natural resistance-associated macrophage protein signature | 164 | 183 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | Pfam | Natural resistance-associated macrophage protein-like | 78 | 439 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | NCBIfam | Nramp family divalent metal transporter | 62 | 428 | - | - | |
| Lac8g1824 | 553 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 55 | 431 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Lac8g1824 | 553 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0603 | Lac-Chr11:6133473 | Lac8g1824 | Lac-Chr8:36534364 | 2.30E-168 | dispersed | |
| Lac8g1824 | Lac-Chr8:36534364 | Lac9g1251 | Lac-Chr9:29001099 | 1.80E-88 | dispersed | |
| Lac8g1824 | Lac-Chr8:36534364 | Lac1g0302 | Lac-Chr1:6949608 | 1.20E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g1824 | K21398 | - | csv:101219356 | 938.717 |