Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1831 ATGTCGGAAGCAACTGCAGTCATGGACATTGACGACGATAATGGCAACAACGAAGCTGAAAAGTCCGTCAAGGGCAAAAATGTCGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCAATACCCTGGGTTGAGAAGTTCCGGCCTAAGTCTCTCGCCGATGTTGCTGCTCATCGTGACATCGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTCTATGGAACAAACTACCAAAACATGATACTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAACAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCGTTTGGGGCAAAAGCATCTGTAAAATTGGTACTACTGGATGAGGCAGATGCCATGACTAAAGACGCACAATTTGCTTTACGTAGAGTAATTGAGAAATATACGAAAAATACAAGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGGTTTCGATTTGCTCCCCTTGATAACTTCCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTATGCACAGGAAATCCAATGCCCAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTCAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCTCCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTCGGATGCAACGACAAGTTACAACTCGGATCGCTCATCTCATCTTTCACTCGAGCTAGATCTGCACTCATTGGTGCTGCAGAGTAG 1092 44.14 MSEATAVMDIDDDNGNNEAEKSVKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYQNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPPDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIGAAE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36582934 36588305 - Lag0029218.1 Lac8g1831 617665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1831 363 CDD AAA 60 198 - -
Lac8g1831 363 Gene3D - 264 359 - -
Lac8g1831 363 FunFam Replication factor C subunit 5 201 263 - -
Lac8g1831 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lac8g1831 363 Gene3D - 36 198 IPR027417 -
Lac8g1831 363 FunFam Replication factor C subunit 5 34 199 - -
Lac8g1831 363 FunFam Replication factor C subunit 5 264 361 - -
Lac8g1831 363 Gene3D - 202 263 - -
Lac8g1831 363 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Lac8g1831 363 CDD HLD_clamp_RFC 203 261 IPR047854 -
Lac8g1831 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Lac8g1831 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Lac8g1831 363 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac8g1831 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 355 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lac8g1831 363 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0598 Lac-Chr5:6758796 Lac8g1831 Lac-Chr8:36582934 3.60E-55 dispersed
Lac5g2310 Lac-Chr5:41771905 Lac8g1831 Lac-Chr8:36582934 7.50E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1831 K10756 - csv:101217230 686.411