Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1837 ATGGAGTTGAAAGCAGATGTAGCAGAAGTCCAACAAGTACAGCAACATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGACAGAAAGCTTTTGGAAAAGCTCCTAAGAATTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAAGCTCTTAGATATCTGGGTTTGCTTGATGACCTTGACAAATTTTCTTCCTCTGCTGCTTCATTTTCTTCCCCACAACTCTCTCACCAACAAGAAGTCAAAGTCAACCTAATCATGACAGACTACTGTATGCCTGGGATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCTCGGAAAGATATTCCTGTTGTTGTCATGTCATCCGAGAACGAACCTACAAGAATCAACATGTGCTTGGAGGAAGGGGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTCAAGAAGCTGGAGCCTCACCTTCAAAAGTCCCTCAGCCGATCTTCTTCAGAAACAAAGGAAGATGAAACCGACGGAAACGGAATCGGAATCGCTACTTCCGAAGCCGTTGACGATGAAAACAACTCGACAGAAGACAGTAGCAAGAACGACAATAACAATACCTTCAGCAAGAGAAAAGCCGCGAATCCAGAACCACCGGAAAGACGACCAAAACTGAAAGAACAACAAGCTGCAGCCGCAGTATAA 693 44.59 MELKADVAEVQQVQQHFHVLAVDDSLIDRKLLEKLLRISSCEVTCVESGDKALRYLGLLDDLDKFSSSAASFSSPQLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSRKDIPVVVMSSENEPTRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLSRSSSETKEDETDGNGIGIATSEAVDDENNSTEDSSKNDNNNTFSKRKAANPEPPERRPKLKEQQAAAAV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36649279 36651364 - Lag0029224.1 Lac8g1837 617671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1837 230 ProSiteProfiles Response regulatory domain profile. 18 157 IPR001789 GO:0000160(InterPro)
Lac8g1837 230 SMART REC_2 17 153 IPR001789 GO:0000160(InterPro)
Lac8g1837 230 MobiDBLite consensus disorder prediction 154 173 - -
Lac8g1837 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 221 IPR045279 GO:0009736(InterPro)
Lac8g1837 230 CDD REC_typeA_ARR 19 152 - -
Lac8g1837 230 Pfam Response regulator receiver domain 19 150 IPR001789 GO:0000160(InterPro)
Lac8g1837 230 MobiDBLite consensus disorder prediction 154 230 - -
Lac8g1837 230 SUPERFAMILY CheY-like 17 151 IPR011006 -
Lac8g1837 230 Gene3D - 18 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2145 Lac-Chr10:31908164 Lac8g1837 Lac-Chr8:36649279 7.40E-46 dispersed
Lac8g1837 Lac-Chr8:36649279 Lac8g2104 Lac-Chr8:39471731 2.20E-43 dispersed
Lac2g0939 Lac-Chr2:7392125 Lac8g1837 Lac-Chr8:36649279 2.70E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24290 PF00072 Response_reg 1.30E-17 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1837 K14492 - csv:101216267 280.026