Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1851 ATGACAGATCAAGTGTCGGATAGTGCTTCTAGAGTTCTGAGTTTGTTTTTGTTTGTTGTTTTAGCTTCTATTCTGGCCAATGTAGTTTTTTACAAGACTCGCCCGTCTGACACTCTCTCGTCGATTGCTAATTCTATCTATGCTGGTTTGGTCTCGTCGGATCAGATTCGTGAGGCGAATTCCATTTCGGACCCCTCTGTTCTTGATGTTGGACAGACCCTTGTTGTGTCGCTTCCTTGTACTTGCTTTAATGGGACTGACAATTCGTTGCCTGCCATTTACTTGTCTTACGTTGTTCAACCTAAAGATACTTTAGCTGGGATTGCGTCTAGATATTCGACCACTATCACTGACTTGATGTTGTTAATCTTCATGTTCATGTTGAATCTTTTGTGGAAGATCTCCTGTGCGTCTAAGTTTCCGAGATATGCCTCCGACTTTGGCTTGATTGTCCCCAATGGAAGTTATGCGATAACCGCGAGTCATTGTGTTATGTACTGTATGCCCGCTCCCTTTGTCGTTTCTTGTTCGAGTATGCAATGCAGAGGCAACGATCTAATGCTTGGGAACTCCACTACACAGCAGAGTAGTGCAGGTTGCAATGTTACGTCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATATTGACGACGTTGTCTTCGAATCTTCAGCCTGGATGCCCAGTCGAGGCACGCTTTCAAAGCGCTGTCCTGAAGACAATTATTCGCTCTGCACGGGTTGCTAGCAGACTACAGCGATTGTCTCAGCAGGATACAACGACTAACTCCGGTAGAACAACAACCTCGAACTACACGGATCTGGCAGAACCCTCAGATACTTACTCTCAACAAAACCAAAATCAAAAGAAGGAAATATAA 879 44.25 MTDQVSDSASRVLSLFLFVVLASILANVVFYKTRPSDTLSSIANSIYAGLVSSDQIREANSISDPSVLDVGQTLVVSLPCTCFNGTDNSLPAIYLSYVVQPKDTLAGIASRYSTTITDLMLLIFMFMLNLLWKISCASKFPRYASDFGLIVPNGSYAITASHCVMYCMPAPFVVSCSSMQCRGNDLMLGNSTTQQSSAGCNVTSCSYGGFVNGTILTTLSSNLQPGCPVEARFQSAVLKTIIRSARVASRLQRLSQQDTTTNSGRTTTSNYTDLAEPSDTYSQQNQNQKKEI 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36817462 36819276 + Lag0029238.1 Lac8g1851 617685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1851 292 SUPERFAMILY LysM domain 28 77 IPR036779 -
Lac8g1851 292 CDD LysM 96 120 IPR018392 -
Lac8g1851 292 ProSiteProfiles LysM domain profile. 29 76 IPR018392 -
Lac8g1851 292 Pfam LysM domain 97 121 IPR018392 -
Lac8g1851 292 Pfam LysM domain 31 76 IPR018392 -
Lac8g1851 292 MobiDBLite consensus disorder prediction 252 292 - -
Lac8g1851 292 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 29 228 - -
Lac8g1851 292 Gene3D LysM domain 86 122 IPR036779 -
Lac8g1851 292 CDD LysM 29 76 IPR018392 -
Lac8g1851 292 Gene3D LysM domain 28 85 IPR036779 -
Lac8g1851 292 SMART LysM_2 30 77 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1851 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2331 Lac-Chr13:36876859 Lac8g1851 Lac-Chr8:36817462 2.70E-92 dispersed
Lac3g1829 Lac-Chr3:20304584 Lac8g1851 Lac-Chr8:36817462 3.60E-08 dispersed
Lac8g1851 Lac-Chr8:36817462 Lac1g0166 Lac-Chr1:3243697 1.10E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g2331 . 293 668 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.0 1.8e-149 526.6
Lac8g1851 . 31 233 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 63.2 2.1e-73 273.9
Lac13g2331 . 293 694 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 60.2 9.3e-133 471.1
Lac8g1851 . 31 228 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 59.1 3.7e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016550 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1