Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1882 ATGGCATCTGCCATGGCCAAAGCCAAAACGCAGAGAAAGCTCATCAGACAGAACCATGAAAACCAGAAGCCGAAGCCGCAGAAGGCAGAGAAGCCGCCGTCTTGGGCAGTTGTTAGAGGCATATTCAGTTGCAAGTACCTGCAGCCTCAACAGCAACCAGAAAAACAACAACAGCAACATCAATTGCCACGCAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGAGTAGCAAGAACTGTAAGAAAATGAGGTGTTCGGGTTCACTCTGTAGCAACACTAAGGTAACACACAGGCTTGAAGCAGCAGCATCGCCGGAAGTTCACAAGAAAAGGGCATTGGCTTCAATGGGTTCCAAAAACAATGAGTCTTCGAGTTCAAGTAGATCCACGAAAGCTCCTCCTTTGAATGAACAAAATGGTGTTCTATCAGCCACATGTTCATCATTATCTGCATCATCGTCTTCTAATTCCTCCAATGGTGCCTCTTTCAGGGGAATGCCTTTCAGGAGGTTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTCTTGGGATGACTAGAGATCCTTCACTTAGAGCAACCATTTGCCCTTGTCCTCAATGTGGTGAGATTTTCATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTGTCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTGAAAAAGCAAACTCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTCCAAAGACCATCTCGAAATTCGAGGAATACAGGGACTCCATTAAAGCCAAAGCCACAAAGCTTCCAAAGAAGCACCCACGTTGCATAGCAGACGGCAACGAACTGCTAAGGTTCCACTGCACCACCTTGGCCTGTTCGCTGGGCCTAAATGGCTCCTCTAATCTCTGCAGTTCAATCCCACCATGCAATGTCTGTAACATAATCAAGAATGGGTTCAAGGTGGCCGCAGAGGCCACCGGAGGGGACGCCGGAAAGGGCATTCTAACAACGGCAACAAGTGGAAAGGCTCATGACAGTGCCGGAATATCATCGGACGGGAATGACAAACGAGCAATGCTGGTTTGCCGGGTAATAGCTGGCAGGGTGAAGAAGAGTTCAGAAGGCAGCATGGAAGATTACGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTATACGTATTCAGTCCCAAGGCAATATTGCCCTGTTTTGTTGTGATTTATGGAGGGTTTTAA 1296 46.68 MASAMAKAKTQRKLIRQNHENQKPKPQKAEKPPSWAVVRGIFSCKYLQPQQQPEKQQQQHQLPRKEKQQEQATEESSKNCKKMRCSGSLCSNTKVTHRLEAAASPEVHKKRALASMGSKNNESSSSSRSTKAPPLNEQNGVLSATCSSLSASSSSNSSNGASFRGMPFRRFYGCYECKMVIDPVLGMTRDPSLRATICPCPQCGEIFMKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPPCNVCNIIKNGFKVAAEATGGDAGKGILTTATSGKAHDSAGISSDGNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37064246 37065644 - Lag0029269.1 Lac8g1882 617716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1882 431 MobiDBLite consensus disorder prediction 47 78 - -
Lac8g1882 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Lac8g1882 431 MobiDBLite consensus disorder prediction 59 78 - -
Lac8g1882 431 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
Lac8g1882 431 Coils Coil 55 75 - -
Lac8g1882 431 MobiDBLite consensus disorder prediction 116 139 - -
Lac8g1882 431 MobiDBLite consensus disorder prediction 101 139 - -
Lac8g1882 431 MobiDBLite consensus disorder prediction 13 27 - -
Lac8g1882 431 MobiDBLite consensus disorder prediction 101 115 - -
Lac8g1882 431 Gene3D - 222 429 - -
Lac8g1882 431 SUPERFAMILY ADP-ribosylation 223 429 - -
Lac8g1882 431 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 428 - -
Lac8g1882 431 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2261 Lac-Chr11:38669947 Lac8g1882 Lac-Chr8:37064246 2.90E-29 dispersed
Lac2g0151 Lac-Chr2:1127745 Lac8g1882 Lac-Chr8:37064246 2.20E-86 dispersed
Lac5g1618 Lac-Chr5:32920284 Lac8g1882 Lac-Chr8:37064246 1.80E-62 dispersed
Lac8g1882 Lac-Chr8:37064246 Lac9g2418 Lac-Chr9:43246694 7.70E-42 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24295 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1882 - - - 0.0