Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1900 ATGGATTCGAGGAAAGTTGCTGGGAAACCCAAGCTTGGCCGAGTTAATGCGGCCAAGAACATCGATTACGACGCTGGGTCCTCGTCTTCTTCGCTCGAAGATTTTTCTGGCTCTCTTTATACTCGTTCCATGGAGACGCTGGATCCCTCCAGCTTCCGGATTAAAGGGCTTGAAGGTGAAGTTGATCTCATATGTCGGACTTTGGGGTTAACGGGTCCTGAAGACTTTGCTATTCCGATGGAGGCTTGGGAGGCCAGAAAGGTTCGTTCATCGTCCGAGCTTCTACCGAAGTCGAGGTTGTACCCTATGGATAGCCCGAAGAGCGAGGAGGTTAATAAGGAGAAGGAAGATAAAGCAGTGGATGATGAATTGTGCCGGAGGGTTAAGGATTCGGTTCGAATTAGCGTCGAGCAATCTACGCCCAAGACTGATCTCGACTTGAATGAACGCCGTATGGCTACTGCTACCGGATGTAGCTCGAGAAGTGGAATCAATGGTGCGCGGCCTCCCTTCCTCAAGCCGCCGCCGGTCATGCGGGTTCCGGATTTCGATACTACTTGCTCGACTTGGGACATTCTGAAATCTTTTGCTCCTTTAGTTGACGATGAAAATGAGGATGAAGTTCGAGAACGAATCGAACCTTTGGTTGAAGGAGAAGGAGAGGGGAATATTGTCAGGCCTGCGGGGAACTCGCTCATTGGGTCTTGGGGTTCCTTCTCAACCTCGAATGATGACGATTGTTCGAGCAGTACCACGGAGCCTGCAAATATTTCACCTAATATGAGAAGTAAACCCATCATCACATCTTGGATAAAGGGTAGGGCTCTAGGGCACGGTTCATTTGGATCAGTATACGAAGCAATTTCAGAGGAAGGGATATTTTTTGCAGTCAAGGAAGTTTCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAGCTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCACGAGAACATAGTTCAGTACTACGGCACAGATACGGATGGTTCAAAACTCTATATTTTTCTTGAGCTTGTATCTCAAGGCTCCCTTATGCATCTATATCAGAGGATTCAACTTATGGATTCCATTGTTGCTGCCTATACAAGGCAGATCCTGTCTGGTTTAAAGTATCTTCATGACCAAAATGTGATTCACAGGGATATTAAATGTGCTAATATATTGGTGGATGTGAATGGATCTGTGAAGCTTGCGGATTTTGGTTTGGCGAAGGCAACAAAAGTTAATGATGTTAAATCTTGCAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATGGGAAGGGCCAAGGATACGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACTCGAAAGCTTCCATACTCGGAATTCGAAAGTCATATGCAGGCACTATTTAAGATCGGAAAAGGCGTACCACCTGCAGTTCCCGAGTCTCTCGCAAAAGATGCACAGGATTTCATCCGGCAGTGCCTACAAGTTAATCCGAAAGATCGTCCTACTGCTGCCGATCTTTTAAATCACCCGTTTGTGAAAAAACCAGTTTCCAGTTTTTCTTCAGGGTCGGCATCTCCTTACAACAGGCACGACAGAAAGATTTAA 1641 46.56 MDSRKVAGKPKLGRVNAAKNIDYDAGSSSSSLEDFSGSLYTRSMETLDPSSFRIKGLEGEVDLICRTLGLTGPEDFAIPMEAWEARKVRSSSELLPKSRLYPMDSPKSEEVNKEKEDKAVDDELCRRVKDSVRISVEQSTPKTDLDLNERRMATATGCSSRSGINGARPPFLKPPPVMRVPDFDTTCSTWDILKSFAPLVDDENEDEVRERIEPLVEGEGEGNIVRPAGNSLIGSWGSFSTSNDDDCSSSTTEPANISPNMRSKPIITSWIKGRALGHGSFGSVYEAISEEGIFFAVKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTDTDGSKLYIFLELVSQGSLMHLYQRIQLMDSIVAAYTRQILSGLKYLHDQNVIHRDIKCANILVDVNGSVKLADFGLAKATKVNDVKSCKGTAFWMAPEVVNGKGQGYGLPADIWSLGCTVLEMLTRKLPYSEFESHMQALFKIGKGVPPAVPESLAKDAQDFIRQCLQVNPKDRPTAADLLNHPFVKKPVSSFSSGSASPYNRHDRKI 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37256127 37261517 - Lag0029287.1 Lac8g1900 617734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1900 546 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
Lac8g1900 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1900 546 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 104 526 IPR050538 -
Lac8g1900 546 SUPERFAMILY Protein kinase-like (PK-like) 269 528 IPR011009 -
Lac8g1900 546 MobiDBLite consensus disorder prediction 103 117 - -
Lac8g1900 546 SMART serkin_6 270 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1900 546 MobiDBLite consensus disorder prediction 98 117 - -
Lac8g1900 546 Pfam Protein kinase domain 272 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1900 546 Gene3D Transferase(Phosphotransferase) domain 1 269 544 - -
Lac8g1900 546 MobiDBLite consensus disorder prediction 155 177 - -
Lac8g1900 546 ProSiteProfiles Protein kinase domain profile. 270 524 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1900 546 FunFam Mitogen-activated protein kinase 1, putative, expressed 268 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0356 Lac-Chr6:2949106 Lac8g1900 Lac-Chr8:37256127 5.20E-64 dispersed
Lac6g2641 Lac-Chr6:44160082 Lac8g1900 Lac-Chr8:37256127 3.80E-51 dispersed
Lac8g0237 Lac-Chr8:2622693 Lac8g1900 Lac-Chr8:37256127 7.60E-28 dispersed
Lac8g1883 Lac-Chr8:37072774 Lac8g1900 Lac-Chr8:37256127 4.80E-24 dispersed
Lac8g1900 Lac-Chr8:37256127 Lac9g2041 Lac-Chr9:40031485 1.30E-38 dispersed
Lac8g1900 Lac-Chr8:37256127 Lac11g0043 Lac-Chr11:370305 1.90E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86374 PF00069 Pkinase 3.30E-69 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1900 K13414 - csv:101218538 894.804