Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1915 ATGGATTCAAGGGGGCATTCCAATGGCGGAGAACTTGAAACAAAAGAGATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACTCAGTACATTCACAAGGTGGGGGTTCCACCGAAGCAAAATCTCTTCAAAGAATTTAAAGCTACAGTGAAAGAGACTTTCTTTGCAGATGATCCTCTGCGAACGTTCAAGGATCAATCGAAGTCCCGAAAGTTGATCCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAAGAATTACAATCTGAATAAATTTAGAGGAGATATGGTTGCTGGACTCACTATTGCAAGTCTGTGTATTCCACAGGATATAGGGTATGCAAAGCTTGCTAATTTGGCTCCCCAGTATGGATTATACTCCAGTTTTGTACCACCACTGGTTTATGCTTTGATGGGTAGCTCAAGAGACATAGCGATTGGACCAGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTGCAAAAGGAGTTTGATTACCATACACATCCAGAAGAGTATTTGCGGCTTGCATTTACAGCTACCTTTTTTGCCGGGATCACCCAGGCCACACTAGGGATCCTAAGGTTGGGTTTTCTGATTGACTTTCTGTCTCACGCTGCCATTGTTGGTTTTATGGGTGGAGCTGCAATCACTATTGCACTTCAACAGCTTAAAGGCTTTCTTGGCATTACGAAGTTTACAAAGAAAACAGATATTATCTCTGTAATGCGCTCAGTATTTGAGGCAGCACATCATGGATGGAACTGGCAGACTATAGTCATCGGAGTAGCTTTTCTGAGTTTTCTTCTATTAGCTAAGTATATTGGAAAGAAGAAGAAGAGCCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTGATTCTGTCCACCTTCTTTGTTTACATTACCCATGCAGACGAGAAAGGTGTTGCAATTGTGAAACACATAGAGAAAGGAATCAATCCCTCATCAGTGAAGCAAATTTACTTCACTGGTGACAACCTCCTTAAAGGGTTCAGGATTGGCATTGTGGCCGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTTCCATGAAGGATTACCAGCTTGATGGTAACAAAGAAATGGTGGCACTTGGAACAATGAATGTCATTGGTTCAATGACTTCCTGCTATGTTGCAACAGGCTCATTCTCTCGGTCAGCTGTGAATTATATGTCTGGCTGCCAAACTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTCTAGAGTTCATCACTCCCCTTTTCAAGTATACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAGGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCTTCGGCGTGATTTTTGCAAGTGTTGAGATAGGCCTCCTAATTGCAGTCGCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCAGTACTTGGAAAGATCCCTAGGACCACAGTATACAGAAACACCCAACAATATCCAGAAGCAACAAGGGTTCCGGGCGTTCTAATTGTCAGAGTCGATTCTGCAATTTACTTTTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTAGCAGATGAGGAAGAACAAATAAAGAAGGCTTATTCAACAAGAACTCAGTTTTTGATCATTGAGATGTCTCCTGTTACCGACATTGACACTAGTGGCATTCATGCCTTGGAAGAGCTATACAGGAATCTCCAGAAAAGAGACATTCAGCTTATTCTGGCAAACCCTGGGCCAGTCGTGATCGACAAACTCCATGCATCCAAACTCACTAATCTGATTGGCGAGGACCATATTTTTCTAACGGTTGCTGAAGCTGTTTCATCCTGCTCTCCAAAATTGGTGGAAGAGGCCTAG 1977 42.08 MDSRGHSNGGELETKEMDIRSLSSSRNNTQYIHKVGVPPKQNLFKEFKATVKETFFADDPLRTFKDQSKSRKLILGIQAIFPIFEWGKNYNLNKFRGDMVAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEFDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGITKFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLSFLLLAKYIGKKKKSLFWVPAIAPLISVILSTFFVYITHADEKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQTAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACMGAFFGVIFASVEIGLLIAVAISFAKILLQVTRPRVAVLGKIPRTTVYRNTQQYPEATRVPGVLIVRVDSAIYFSNSNYIKERILRWLADEEEQIKKAYSTRTQFLIIEMSPVTDIDTSGIHALEELYRNLQKRDIQLILANPGPVVIDKLHASKLTNLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37413485 37417552 - Lag0029302.1 Lac8g1915 617749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1915 658 Gene3D STAS domain 507 653 IPR036513 -
Lac8g1915 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac8g1915 658 Pfam STAS domain 528 646 IPR002645 -
Lac8g1915 658 NCBIfam sulfate permease 82 646 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g1915 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Lac8g1915 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
Lac8g1915 658 FunFam Sulfate transporter 31 507 653 - -
Lac8g1915 658 Pfam Sulfate permease family 95 476 IPR011547 GO:0016020(InterPro)
Lac8g1915 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Lac8g1915 658 PANTHER SULFATE TRANSPORTER 56 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0260 Lac-Chr12:2855453 Lac8g1915 Lac-Chr8:37413485 8.00E-261 dispersed
Lac12g0261 Lac-Chr12:2871162 Lac8g1915 Lac-Chr8:37413485 3.40E-259 dispersed
Lac7g0709 Lac-Chr7:5711075 Lac8g1915 Lac-Chr8:37413485 7.20E-193 dispersed
Lac8g1915 Lac-Chr8:37413485 Lac8g2474 Lac-Chr8:42657755 2.20E-109 dispersed
Lac8g1915 Lac-Chr8:37413485 Lac8g1916 Lac-Chr8:37470810 6.00E-171 tandem
Lac2g0871 Lac-Chr2:6864122 Lac8g1915 Lac-Chr8:37413485 1.20E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1915 K17470 - csv:101212138 1207.97