Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1916 ATGGGTTCTTTGCCTTCTGAGACTTTGGCCGTCGAAATGGCCGACACCCATGTTCTTGCCGGCGCCGGTGCCGGTGCCGGAGCTGAGACCACTGAGTGGCTTCTCAATTCTCCCAACCCTCCAACTATTTGGGAAGAAATTGTCGGCGCTGTCAAAGAAAATGTCATTCCTCGAAGTTGCTCGAAGACTTCCATGGCAAAGAAGAAGAAGAAGAAGGAAAGCACTTCTTCCAGCTCCGAAAAACAGAGCATTTTCAAAACCACTTTTTTTCTTCTGCAGCGCGTGTTCCCAATCCTCAGATTGGGCAGAGATTACAAAGCTTCAAAGTTCAAAAGCGACCTCATGGCTGGTTTGACTCTCGCCAGTCTCAGCATCCCTCAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCTCAGTTTGGTCTCTATACAAGTGCTGTTCCTCCTTTGATCTATGCGTTAATGGGGAGCTCGAGAGAGATAGCCATTGGCCCAGTGGCTGTGGTTTCACTGCTTCTGTCATCAATGCTTCAAGAAATTCAAGATCCTGTTGCCTATAGAAGGCTTATTTTCACTGTCACCTTCTTTGCAGGGACTTTTCAAGCTGCATTTGGACTTTTGAGATTGGGATTTCTTGTGGACTTTCTTTCTCATGCTGCCATTGTTGGGTTCATGGCTGGTGCAGCCATTCTCATTGGTCTTCAGCAAATGAAAGGTCTGCTTGCCATTAGCAATTTCACTACCAAAACTGATGTGGTCTCTGTTTTGGAATCTGTTGTGAGATCTGTTCACCAGCCTTGGTACCCTTTGAACATTGTACTTGGCTGCTCATTTCTGATCTTCCTCCTTGTGGCCAGGTTCATTGGCAGAAGGAATAAGAAGTTGTTCTGGGTGTCAGCCATTGCTCCTCTCATATCTGTTATTCTCTCCACTTTGATAGTGTTTGTGTCAAGAGCTGACAGACATGGAGTTAAGATTGTGAAGGAAGTTAAAGAAGGTCTGAATCCAATCTCCATTCATGAGCTGCAATTGAACACCTCAACTTTTGGCTTAGCTGCCAAAGTTGGCCTCATTGCTGCCCTTATTGCTCTCACAGAAGCGATCGCGGTCGGCCGATCCTTCGCCTCCATTAAAGGCTACAACATTGATGGGAACAAGGAGATGATTGCCATGGGCTTCATGAACATAATAGGATCTCTAACCTCTTGCTACCTAGCCACTGGGTCATTCTCAAGAACTGCAGTGAATTTTAGTGCTGGGTGTGAGAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGCTGATACTGCAATTTTTCACTCGGTTTCTCTACTTCACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCTGCTCTTCCTGGTCTCATTGACATCAATGAAGCTTTGCATATCTGGAAGGTTGACAAGCTTGACTTTCTTGCCTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCTGTGGAATTTGGCCTTCTTGTGGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAATCAGACCAGCCACAGAGGAGGTGGGAAGGCTTCCAAGAAGTGACATGTTTTGCAATATGAAGCAATTCCCCATGGCCAAGAAAACTCAAGGAATCTCCATTATCAGAATAAACTCTGGCTTGCTTTGTTTTGCCAATGCCAATTTCATCAGAGACAGGATAATGAAATTGGTAGAAGAAGATGAAGAAGATGGTGATATTGAAGAAACAACAAAAGAGCAACCTAAACAAGTGGTTGTTGATATGTGCAATGTTATGAATATCGACACATCAGGAATCATTATTTTAGAGGAACTTCACCGAAGGTTATTGTTGCGCGGCATACAACTTACAATAGCCAGTCCAAAATGGGAAGTGATCCACAAACTTAAAAAGACCAATTTTTTTGAGAGAATTGAAGGAAGAGTTTTCCTATCAGTTGGTGAAGCTGTGGATTCATGCCTTGGAAATGCTTCCAAATTGCCTTCTCCTTACCAAAGTCATTGA 2034 43.71 MGSLPSETLAVEMADTHVLAGAGAGAGAETTEWLLNSPNPPTIWEEIVGAVKENVIPRSCSKTSMAKKKKKKESTSSSSEKQSIFKTTFFLLQRVFPILRLGRDYKASKFKSDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSAVPPLIYALMGSSREIAIGPVAVVSLLLSSMLQEIQDPVAYRRLIFTVTFFAGTFQAAFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLESVVRSVHQPWYPLNIVLGCSFLIFLLVARFIGRRNKKLFWVSAIAPLISVILSTLIVFVSRADRHGVKIVKEVKEGLNPISIHELQLNTSTFGLAAKVGLIAALIALTEAIAVGRSFASIKGYNIDGNKEMIAMGFMNIIGSLTSCYLATGSFSRTAVNFSAGCESVLSNIVMAITVMLILQFFTRFLYFTPMAILASIILSALPGLIDINEALHIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISIRPATEEVGRLPRSDMFCNMKQFPMAKKTQGISIIRINSGLLCFANANFIRDRIMKLVEEDEEDGDIEETTKEQPKQVVVDMCNVMNIDTSGIIILEELHRRLLLRGIQLTIASPKWEVIHKLKKTNFFERIEGRVFLSVGEAVDSCLGNASKLPSPYQSH 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37470810 37476017 + Lag0029303.1 Lac8g1916 617750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1916 677 SUPERFAMILY SpoIIaa-like 545 663 IPR036513 -
Lac8g1916 677 ProSiteProfiles STAS domain profile. 555 663 IPR002645 -
Lac8g1916 677 PANTHER SULFATE TRANSPORTER 67 664 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g1916 677 NCBIfam sulfate permease 97 656 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g1916 677 Gene3D STAS domain 518 666 IPR036513 -
Lac8g1916 677 CDD STAS_SulP_like_sulfate_transporter 539 654 - -
Lac8g1916 677 ProSitePatterns SLC26A transporters signature. 139 160 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac8g1916 677 Pfam Sulfate permease family 110 486 IPR011547 GO:0016020(InterPro)
Lac8g1916 677 Pfam STAS domain 540 659 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2005 Lac-Chr5:38503155 Lac8g1916 Lac-Chr8:37470810 1.80E-223 dispersed
Lac8g1916 Lac-Chr8:37470810 Lac8g2474 Lac-Chr8:42657755 7.20E-79 dispersed
Lac8g1915 Lac-Chr8:37413485 Lac8g1916 Lac-Chr8:37470810 6.00E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1916 K17469 - csv:101211892 1063.14