Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g1926 | ATGACCGGAAGCGGCGGAAGAGAGGAGGACGGAAGCCGCCGGCCGGATTCCGATGAGGAGGAATACAAGGTCGAGAGCGTTCGTGAACGGATAATATCGTCGCGAGGGAGCCGATTCAATCTGATTCAGAAACAGTTGAGGATTGAGCCGACTCGCAGAGGATTTAGCCGTGAAAATCTCATCAATGGCATTAAGTGCCTCGTTATTCACCCCGACAGCAGGTGGTATAGAGCTTGGACGAAGTTCATACTGATATGGGCAGTGTACTCTTCATTCTTCACACCCATGGAATTTGGATTCTTCAGGGGATTACCAGAGAATCTATTTATACTTGACGTTGCTGGACAATTTGCTTTCCTCGTTGACATTGTTTTCCAGTTCTTCCTCGCCTACAGAGATAGTCGGACTTATCGAATGGTCTATAAGCGCACTCCAATAGCACTTAAGTACTTGAAATCCACTTTTGTGACTGATGTGCTTAGTTGTATGCCCTGGGACATCATTTATAAGGCTTGTGGGAGGAGAGAGGAGGTGAGATACCTCCTATGGATAAGGTTATTCCGGGTGCGGAAAGTTGATGCTTTTTTTAAGACGATGGAGAAGGATATACGTATTAATTATATGTTCACTAGAATTGTCAAGCTCCTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTCCTTCTGAAGAAGGGTATACATGGATTGGAAGCTTAAAGTTGGGAGATTACAGTTACGCAAATTTCAGAGATATTGACTTATGGAAACGCTACACCACATCCTTATATTTTGCCATTGTCACTATGGCCACTGTTGGTTATGGAGATATACATGCGGTCAACTTGAGGGAAATGATATTCATAATGATTTATGTGTCATTTGACATGGTTATCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTAAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTGGCAGGGATCTCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAAACATTATACTTGCCTTATATTCAGAATGTTTCTCTTTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAAACTCCATGAGGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTAGTTGATCAACTTTATTTTGTCTGTCATGGTGAGCTGGAGGAAGTGGGCATTGGACAAGATGGTTCGGAAGAGACCATATCTTTACTACAGCCCAACAGCACTTTTGGGGAGATATCAATTCTTTGCAATATCCCTCAACCTTATACAGTTCGAGTGTGTGATTTGTGTAGGCTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTAGCTCTCAAGGTTAACAGTGCAGCTTATCATGGAGATCTATACCAACTAAAAGGTCTCATTCGAGCTGGAGCCGATCCAAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTTGCTTTCCTAATTCAGGGAGGAGTAAACATTGACCTTAAAGATAACTTTGGCAATACACCATTAATGGAAGCCATTAAGAACGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAGAATGCTGGAACCTTCCTCTGTACTGCAGTTTCAAGGGGTGATTCAGATCTTCTCAAGAGATTACTGTGTTATGGCATTGACCCCAACTCCAAAGATTACGATTTCCGAACTCCGCTGCATATAGCTGCCTCACAAGGGCTACATTTGATGGCAAAGTTGCTTTTAGAATCAGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGGTTTGTGGAAACAAAAATCTGCTCAAGCTCTTGGAAGAGGCAAAAGCTTCTCAGTTGTCAGAATCCCCTTATTCCTCTCGAGAATTCACAGAGAGAAAACACTCAAAGAAATGTACCGTGTTCCCCTTCCACCCATGGGATCCTAAAGAAAACAGAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTCATCGAAGAATCATCAGAGCAGCTACAAGTTCCAGGTGAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAATGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAG | 2472 | 42.03 | MTGSGGREEDGSRRPDSDEEEYKVESVRERIISSRGSRFNLIQKQLRIEPTRRGFSRENLINGIKCLVIHPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDVAGQFAFLVDIVFQFFLAYRDSRTYRMVYKRTPIALKYLKSTFVTDVLSCMPWDIIYKACGRREEVRYLLWIRLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPPSEEGYTWIGSLKLGDYSYANFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVIGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLGRDLRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQTLYLPYIQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGELEEVGIGQDGSEETISLLQPNSTFGEISILCNIPQPYTVRVCDLCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGFEDIVAFLIQGGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKQGASLKVENAGTFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASQGLHLMAKLLLESGASVFSKDRWGNTPLDEGRVCGNKNLLKLLEEAKASQLSESPYSSREFTERKHSKKCTVFPFHPWDPKENRRPGIMLWVPLTIEELIEESSEQLQVPGECCILSEDGGKILDVHMIDECQKLYLVPETH | 823 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 37568654 | 37578061 | - | Lag0029313.1 | Lac8g1926 | 617760 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g1926 | 823 | SMART | ANK_2a | 607 | 636 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | SMART | ANK_2a | 704 | 733 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | SMART | ANK_2a | 574 | 603 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | SMART | ANK_2a | 638 | 667 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat region circular profile. | 574 | 606 | - | - | |
| Lac8g1926 | 823 | SUPERFAMILY | Ankyrin repeat | 546 | 726 | IPR036770 | - | |
| Lac8g1926 | 823 | ProSiteProfiles | KHA domain profile. | 750 | 823 | IPR021789 | - | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat region circular profile. | 671 | 703 | - | - | |
| Lac8g1926 | 823 | Pfam | KHA, dimerisation domain of potassium ion channel | 749 | 818 | IPR021789 | - | |
| Lac8g1926 | 823 | Gene3D | - | 639 | 735 | IPR036770 | - | |
| Lac8g1926 | 823 | CDD | CAP_ED | 397 | 511 | IPR000595 | - | |
| Lac8g1926 | 823 | SUPERFAMILY | cAMP-binding domain-like | 325 | 515 | IPR018490 | - | |
| Lac8g1926 | 823 | Pfam | Ankyrin repeats (3 copies) | 643 | 725 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | Pfam | Ankyrin repeats (3 copies) | 549 | 636 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat profile. | 574 | 606 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | PRINTS | Ankyrin repeat signature | 575 | 590 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | PRINTS | Ankyrin repeat signature | 687 | 701 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat profile. | 638 | 670 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | PRINTS | EAG/ELK/ERG potassium channel family signature | 269 | 286 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac8g1926 | 823 | PRINTS | EAG/ELK/ERG potassium channel family signature | 313 | 322 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac8g1926 | 823 | PRINTS | EAG/ELK/ERG potassium channel family signature | 221 | 231 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac8g1926 | 823 | PRINTS | EAG/ELK/ERG potassium channel family signature | 112 | 122 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac8g1926 | 823 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 397 | 517 | IPR000595 | - | |
| Lac8g1926 | 823 | Gene3D | - | 79 | 323 | - | - | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat region circular profile. | 607 | 638 | - | - | |
| Lac8g1926 | 823 | Gene3D | Jelly Rolls | 381 | 520 | IPR014710 | - | |
| Lac8g1926 | 823 | SUPERFAMILY | Voltage-gated potassium channels | 70 | 322 | - | - | |
| Lac8g1926 | 823 | PANTHER | POTASSIUM CHANNEL AKT1 | 28 | 818 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lac8g1926 | 823 | FunFam | Potassium channel KAT2 | 385 | 521 | - | - | |
| Lac8g1926 | 823 | ProSiteProfiles | Ankyrin repeat profile. | 607 | 639 | IPR002110 | GO:0005515(InterPro) | |
| Lac8g1926 | 823 | Gene3D | Helix hairpin bin | 324 | 380 | - | - | |
| Lac8g1926 | 823 | Pfam | Ion transport protein | 76 | 324 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g1926 | 823 | SMART | cnmp_10 | 397 | 515 | IPR000595 | - | |
| Lac8g1926 | 823 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lac8g1926 | 823 | Gene3D | - | 525 | 638 | IPR036770 | - | |
| Lac8g1926 | 823 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
| Lac8g1926 | 823 | Pfam | Cyclic nucleotide-binding domain | 417 | 501 | IPR000595 | - | |
| Lac8g1926 | 823 | FunFam | Potassium channel SKOR | 77 | 322 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0415 | Lac-Chr6:3378262 | Lac8g1926 | Lac-Chr8:37568654 | 1.50E-76 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g1926 | K21867 | - | csv:101210912 | 1506.89 |