Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1945 ATGGCACTTGCAAATTCAGCAGTACAAGAAGTCGATGGCATGGAGAAAGCTGGTGGATATATGAAGACTTTAGCCATTGGAAGCCATGAGAATCCAAATGGAAACTTTGTGTTTCGAAACACCACTAATTACCTGCAACTCGATCAGCAACAGCAAATGTCTCAGTCTTTGATCAACTTCAAGTGTGGGATTGACAATCTTTTCCACAAGAACAATAGTGAGTCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATCAGCAGCGTCTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAACAATTACAGCCCTGCAAAAGAGAACAAAAATGGAGATGGATCTGTCTACGAGTGGCTTTATTCTGAACCTACTGTTGTTTCTGATGCCATTCAAGAGGCTCAACCTGCTCAGGAGATTGGAAATCATAAGCGTCCCCATATGGGAGAGAGCAGTGGGGGTGTTTGTAAGAAGCAATGCACAGCTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCAAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTTCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCGGTTCAAGGTGGGAAAGCGCCTGACATTTCCCAAGTTAAGGAAGCCATTGATGCCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACAGTGAAAAGTGA 834 43.53 MALANSAVQEVDGMEKAGGYMKTLAIGSHENPNGNFVFRNTTNYLQLDQQQQMSQSLINFKCGIDNLFHKNNSESLLSFEPQGVCQDTYNWDQQRLMEDPNCFQTATNNYSPAKENKNGDGSVYEWLYSEPTVVSDAIQEAQPAQEIGNHKRPHMGESSGGVCKKQCTAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSEK 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37821383 37824020 + Lag0029332.1 Lac8g1945 617779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1945 277 CDD bHLH_AtIND_like 181 243 - -
Lac8g1945 277 SMART finulus 186 235 IPR011598 GO:0046983(InterPro)
Lac8g1945 277 MobiDBLite consensus disorder prediction 149 193 - -
Lac8g1945 277 MobiDBLite consensus disorder prediction 172 186 - -
Lac8g1945 277 Gene3D - 173 237 IPR036638 GO:0046983(InterPro)
Lac8g1945 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983(InterPro)
Lac8g1945 277 Pfam Helix-loop-helix DNA-binding domain 188 230 IPR011598 GO:0046983(InterPro)
Lac8g1945 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 62 247 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g1945 277 FunFam Transcription factor bHLH83 178 237 - -
Lac8g1945 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 238 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0175 Lac-Chr12:1962102 Lac8g1945 Lac-Chr8:37821383 7.30E-18 dispersed
Lac2g0387 Lac-Chr2:2845294 Lac8g1945 Lac-Chr8:37821383 3.20E-19 dispersed
Lac8g1945 Lac-Chr8:37821383 Lac9g0990 Lac-Chr9:22954940 3.10E-12 dispersed
Lac8g1945 Lac-Chr8:37821383 Lac6g0252 Lac-Chr6:2037952 2.20E-18 transposed
Lac8g1945 Lac-Chr8:37821383 Lac5g2599 Lac-Chr5:44432947 2.20E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24297 PF00010 HLH 8.60E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1945 - - - 0.0