Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1949 ATGGCGGATGTGGCCGAGAAGCTCGAGCAGTTGGAGATGGTCATGGGAACTGCTCACGAAGATGGGATTTCTCACCTGGCTTCTGATACTGTTCATTATAATCCTTCTGATCTATCTGCTTGGGTTCAAAATATGCTCTCTGAATTCAATCATTCCCCCAACCATTTCGCCTCTGCCCCCCAATCTTCTCACTCGCGGATTCAATCCACATCTTCGCGCTTGTATGACGACGATTCTGAGTACGATCTGAGCGCCATTCCTGGCGATGCGGTTTTGCCTCCCAAACACTCCTCCTCCACGGAAATCGAAACTAATTCTCCTAAGCGATTGAAAATTGGGGGAGAGAGTTCGCTGAATTTGTTACCGTCGTCGTCCTCGCCGCCATTCGTTGCTACGACCGCCGGGATTGTCTCTGAACCGTCTCGCCCGGTGGTGGTTGTCGAGGAGCTCTCGCAAGAGACAGGGATTCAACTCGTTCACACTCTAATGGCCTGCGCCGAGGCGGTTCAGCAAGAGAATATGAAGCTCGCCGGTGCCTTGGTGAAGCACATCGAATTGCTGGCGGCGTCGCAAGCCGGAGCGATGAGGAAAGTTGCGACGTATTTCGCCCAAGCCCTAGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGACTCTACTCCGATCCTCTCCAGATGCACTTCTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCCATTCTCGAAGCATTCGCGACGGCGCCGAGGGTTCATGTTATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTGATGCAGGCTCTCGCATTACGCCCAGGAGGTCCGCCAGTTTTCCGATTGACCGGAATCGGCCCGCCGCGGCCGGATAATACGGCCGATTCCTTGCAGCAAGTCGGTTGGAAGTTAGAGCAGGTGGCGGAGGCCATAGGCGTCGAGTTTGAGTTCAATCACATCGTGTGTGGTAATCTGGCCGATCTCGATCCGGCGGCTCTGGAGATCCGGCCGGCGGCGGTGGAGGCGGTGGCGGTGAACTCGGTGTTCGATCTGCACCGATTGCTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATTGTGACGATTGTGGAACAGGAAGCGAACCACAACGGGCCGGTTTTCCTCGACCGGTTTACTGAGGCCTTGCATTATTACTCGAACCTGTTTGATTCACTCGAGGGGTCTTCAGCCGGGTTCGAACCGGCGAATGAGGACGTGTTTTTGTCGGAGGTTTATTTGGGGAGGCAGATTTGGAATGTGGTGGCTTGTGAAGGAACGGACCGAGTCGAGCGCCACGAGTCATTGACTCAGTGGCGAACTCGGATGGAATCGGCCGGGTTCGACCCGGTTCATCTCGGTTCAAACGCGTTTAAGCAGGCTAGTATGCTTTTGGCCCTCTTTGCTGGCGGAGAAGGGTACAGGGTGGAGGAGAATAATGGGTGTTTGATGCTTGGCTGGCACACTCGACCGTTGATTGCCACGTCAGCTTGGCAGCTCACCACGGATGAGTCGAAGTGA 1587 54.51 MADVAEKLEQLEMVMGTAHEDGISHLASDTVHYNPSDLSAWVQNMLSEFNHSPNHFASAPQSSHSRIQSTSSRLYDDDSEYDLSAIPGDAVLPPKHSSSTEIETNSPKRLKIGGESSLNLLPSSSSPPFVATTAGIVSEPSRPVVVVEELSQETGIQLVHTLMACAEAVQQENMKLAGALVKHIELLAASQAGAMRKVATYFAQALARRIYRIYSPQDGLYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAPRVHVIDFSLNQGMQWPALMQALALRPGGPPVFRLTGIGPPRPDNTADSLQQVGWKLEQVAEAIGVEFEFNHIVCGNLADLDPAALEIRPAAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSAGFEPANEDVFLSEVYLGRQIWNVVACEGTDRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLTTDESK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 37867981 37869567 - Lag0029336.1 Lac8g1949 617783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1949 528 MobiDBLite consensus disorder prediction 52 70 - -
Lac8g1949 528 MobiDBLite consensus disorder prediction 52 106 - -
Lac8g1949 528 SMART DELLA_2 1 59 - -
Lac8g1949 528 Gene3D - 1 49 IPR038088 -
Lac8g1949 528 ProSiteProfiles GRAS family profile. 149 521 IPR005202 -
Lac8g1949 528 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 113 520 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lac8g1949 528 Pfam GRAS domain family 158 521 IPR005202 -
Lac8g1949 528 Pfam Transcriptional regulator DELLA protein N terminal 1 53 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1624 Lac-Chr8:34235615 Lac8g1949 Lac-Chr8:37867981 4.30E-181 dispersed
Lac8g1949 Lac-Chr8:37867981 Lac8g2990 Lac-Chr8:46753538 1.30E-83 dispersed
Lac8g1949 Lac-Chr8:37867981 Lac3g0856 Lac-Chr3:6861724 2.40E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24298 PF03514 GRAS 3.00E-133 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1949 K14494 - csv:101213911 876.7