Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1970 ATGGACAAGAACAACAACCAACCTGAGAATCAACAACACCTTCTTCACAAGGCCTCTAGCTTCACCGCCAAGGACGACGCCCCCGCTGATGATAATGCCAATCTCGCCGCTCCAGATCCTGCTGCTGCTTCCCTTGCGGATGCCGACGCCGATGTGAAATCTGCCGAGAAATTATTGGAGGATCAGGATCAGAAGGAGGAGATCAAGGAGGAGGACGAAAAGAAGGAGGACGAAAAGAAAGAGGACGAAAAGAAGGAGGAGGAGGAGGAAAAGAAGGAGGAGGCCGAAGACTCCAACCATGAACCGGATCTTCATTATAATCTCCACACCATTCTTCCAGATGTCGATCAATTCCTGCTAGCTCCTCACGGTTCTCGCGATCGAGACGAGGATTCCGCTGTCGAGATTCCGAAGTTCATCGACAAGTTCATGGATCTCCTGGATGCGAAGATCGAGCAATACAACAGTGCGGAAGCGGATGCCAAGGACAAAGACTGTCGAGTGCCGGAGGACGAATCGTCGTTTATGGAAGCGGTTGATCGGATATCGAAGCTGAAGAATGCAGTCCACGAAATGAAATTGGAAGAGAAGAATAATTCCTTGGTCAACCGCATTGGAAGCACTCAACAGCAAGCAATTTCTTATTTGGAAGAAGAGTTCAGGTTCTTTCTCGAGGAATCCAGAGATGGCGATACGGATCCTGCTGCTGATACGAAAGGGAAACACGAACCGGATCGCTGTGCAGTAGCACCGGAGGCTGATTCCGATCAAGTCCATTTTCCAGGTTACTCCGACGAGATCGTGAGCTATTTGAACAAAATCGCCAATCAAATGATATCCGGTGGATACGAATCGGAATGTTGCCAAGTTTACATCGTCGCCAGAAGAAACATATTCGAAGAGGCCCTGCAGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAAGCAATGGAGAGGGAGATCGCTACATGGACCAAAACCATCAAGCAATGCGCCACCGTTTTGTTCTCCGGCGAACGGACTCTCGCCGAATCTGTATTTTCTGCGTATCCTCCAATTTCCGCCAGTCTGTTTAGCAACCTTACTCGCGGCATTGTGATTCAACTGTTAAATTTCTCTGAAGGAGTTGCAATGACGAAACGCTCCGCCGAAAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGCGATATGGTCCCAAAAATGGAAAGCTTATATCCAGAAGAATCCGCCAACGAGCTCAAAACAGAGACCACAACCGCTAGAACTCGTCTCGGCGAAGCGGCGATTTGCATATTCTGCGATCTCGAAAACTCGATCAAATCGGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTGACTCGATACACCTTAAACTACTTGAAATACGCTTGCGAGTACAGAACCACACTGGAACAGATTTTCAAAGAACACTCAAAGATCGAGCGAGCCGATTCCACAAGCCGACCACATTTCGAAGGCGAACAACCACCACCGAGTTACAACCCTAGCGCTGACAATCAATCACCATTCTCCGTGGAACTGACGAAGGTGATGGAGCTCCTGGACTCAAATCTGGAAGCAAAAGCAAAGCTATACAGAGACATACCACTGAGTTCAATCTTCATGATGAACAATGGCCGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATTCACGAACTGGTCGGCGATGCGTGGTACAGGAAGAGATCTTCCGATCTCCGTCAGTACCACAAGAGTTACCAGAGAGAGACGTGGGGCAGATTGTTGGGTTGTTTGAACCACGAGGGACTGACGGTGCACGGGAAAGTGGTTAAGCCAGTGCTGAAGGAGAGGTTTAAGGGATTCAACGCCCTGTTCGAAGAGATTCACAAAACACAGAGCTCGTGGGTCATCAGCGACGAGCAGCTTCAATCGGAGCTCCGAGTTTCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTCCTAGGGAGGTTCTCGCAGTACTTGGATCCGGGGAGACAGACGGAGAAATACATTAAGTTTCAGCCTGAAGACATAGAAACCTACATAGATGATCTATTCGATGGAAACCCAACCTCCATGGCAAGAAGGAGAACATAA 2148 48.6 MDKNNNQPENQQHLLHKASSFTAKDDAPADDNANLAAPDPAAASLADADADVKSAEKLLEDQDQKEEIKEEDEKKEDEKKEDEKKEEEEEKKEEAEDSNHEPDLHYNLHTILPDVDQFLLAPHGSRDRDEDSAVEIPKFIDKFMDLLDAKIEQYNSAEADAKDKDCRVPEDESSFMEAVDRISKLKNAVHEMKLEEKNNSLVNRIGSTQQQAISYLEEEFRFFLEESRDGDTDPAADTKGKHEPDRCAVAPEADSDQVHFPGYSDEIVSYLNKIANQMISGGYESECCQVYIVARRNIFEEALQKLGFEKHSIDDIQKMNWEAMEREIATWTKTIKQCATVLFSGERTLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMESLYPEESANELKTETTTARTRLGEAAICIFCDLENSIKSDTGKTPVPGGAVHPLTRYTLNYLKYACEYRTTLEQIFKEHSKIERADSTSRPHFEGEQPPPSYNPSADNQSPFSVELTKVMELLDSNLEAKAKLYRDIPLSSIFMMNNGRYILQKIKGSADIHELVGDAWYRKRSSDLRQYHKSYQRETWGRLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWVISDEQLQSELRVSISAVMIPAYRSFLGRFSQYLDPGRQTEKYIKFQPEDIETYIDDLFDGNPTSMARRRT 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38146116 38148263 + Lag0029357.1 Lac8g1970 617804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1970 715 Gene3D Exocyst complex component Exo70 121 713 - -
Lac8g1970 715 FunFam Exocyst subunit Exo70 family protein 159 711 - -
Lac8g1970 715 Pfam Exo70 exocyst complex subunit C-terminal 330 701 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac8g1970 715 Coils Coil 45 101 - -
Lac8g1970 715 MobiDBLite consensus disorder prediction 493 520 - -
Lac8g1970 715 MobiDBLite consensus disorder prediction 1 106 - -
Lac8g1970 715 MobiDBLite consensus disorder prediction 1 18 - -
Lac8g1970 715 SUPERFAMILY Cullin repeat-like 170 704 IPR016159 -
Lac8g1970 715 Pfam Exocyst complex component Exo70 N-terminal 144 225 - -
Lac8g1970 715 MobiDBLite consensus disorder prediction 50 87 - -
Lac8g1970 715 PANTHER EXOCYST COMPLEX PROTEIN EXO70 84 706 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac8g1970 715 MobiDBLite consensus disorder prediction 227 246 - -
Lac8g1970 715 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1288 Lac-Chr7:12358395 Lac8g1970 Lac-Chr8:38146116 7.00E-167 dispersed
Lac7g2631 Lac-Chr7:44955296 Lac8g1970 Lac-Chr8:38146116 2.40E-42 dispersed
Lac7g2884 Lac-Chr7:47942878 Lac8g1970 Lac-Chr8:38146116 4.50E-107 dispersed
Lac8g1970 Lac-Chr8:38146116 Lac9g2512 Lac-Chr9:43821538 3.80E-70 dispersed
Lac8g1970 Lac-Chr8:38146116 Lac3g0086 Lac-Chr3:577593 5.10E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1970 K07195 - csv:101206040 1123.23