Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1972 ATGGTGCGCCGGAATCCGCTCCGGCTGTGTTTTTCATCTGCGGTGTTTGTTGTTTTGATGTTCTTCCCTGCTGGAGAGGCGGACCTTGCATCCGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCGATGGGCAGTCGGAGCCGGACTCGCCGCTGGAACCTCTCCGATCAGACTCCGTGTTTGTGGCTTGGCGTCACTTGCGGCGGTGGGAGGGTTACTGAACTCCGGCTTCCCGGCGTTGGACTCGTCGGTCAACTTCCTCTAGGGCTTGGAAATTTGACTCAACTGGAAACCCTGTCTCTTCGCTCTAACATGCTTTCCGGTTCCATTCCGTCGGATTTTGCTAACCTCCGCTCCCTCCGGAACCTCTACTTGCAACGGAACTCGTTTTCCAGTGAGATTCCTCCGGTTCTGTTCAGTATTCAGAGTCTGGTTCGCCTGAATTTGGCGCATAACCAGTTTGTCGGTCAGATTTCATCAGGATTCAACAATCTCACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAACTCGCTGGAGTCATTCCTGATTTCAACATACCCTCGCTCAAAACCCTCAATGTTTCTTTCAATCGTCTCAACGGTTCAATCCCTACACAGTTTTCCGATCAGCCAGCGAGTGCCTTCGAAGGCAACTCGCTTTGCGGGAAGCCACTGAGCCCTTGCGACGGCGAGGGGAACAAATTATCATCCGGCGCAATCGCCGGAATTGTAATAGGAAGCTCAATTGCATTATTGATCATCGTTCTGATTTTGATCTTTCTGTGGCGAAAGACAATCAGGATCAATGGGCAGAGCGATGCTCAGACAACGACCTCTGGGAGGTTGTCGTCGGAGGTCGAGAATGGAGGTGGTGGAAATGGAGGAACTGGGAATGAGAGGAGTTTAGTGTTCTGTGGGAAAGGAGAAAGTGCTTTTGATTTGGAGGAACTGTTGAAAGCATCAGCAGAGGTGTTGGGGAAGGGAACTTTTGGGTCAACTTACAAGGTAGCTCTGGATATGGGGATGACTGTGGTGGTTAAGAGGTTGAAAGATGTCAAAGTTTCAAAGGAGGAATTCAAGGAGAAGATTGAAAGCCTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAATGCTTACTATTATGGCAGAGATGAGAAGCTTCTGCTTTGTGATTATGTCCCCATGGGAAGCTTATCTGTGCATTTACATGGCAACAAAGATCCTGGCAGGAGGACTCCATTGAAATGGGAAGCAAGGGCTGGCATTGCGCTTGCCGCCGCTCGTGGAATATCGTATCTACATTCTCGACGACCTCCGACCTCCCATGGGAATATAAAGCCTTCAAACATTCTCCTCAACAGATCCCACGCAGCTTGTGTCTCTGACTTTGGCCTCGTTCAGATTGCAAGCCAATCATCCACTCCAAACCATCTTGCATCCTACCGTGCCCCTGAAGTCACTGATCCTCGAAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTATGGTAATGCTAGAGCTTCTATCAGGGAAGGCTCCGAACTCGCCGATGCTCAATGACGATGGCATAGACCTCCCGCGATGGGTGCACTCGAAGATCGAAGAAAAGCAGACTGCAGAAGTGTTTGATGAGGAGCTGCTAGAATACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCTTGTTGTGTACAGCTCCACACCCAGATAGTCGCCCTTCGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCAATCGATCTTACTGAAAGAACAAGAGGCGGGGAACGATAAGTTTTATGACGTGGACAGTTCTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGGTTCCATCTTCAATCTAG 1890 49.05 MVRRNPLRLCFSSAVFVVLMFFPAGEADLASDTAALVALQKAMGSRSRTRRWNLSDQTPCLWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQRNSFSSEIPPVLFSIQSLVRLNLAHNQFVGQISSGFNNLTNLEVLNLEGNQLAGVIPDFNIPSLKTLNVSFNRLNGSIPTQFSDQPASAFEGNSLCGKPLSPCDGEGNKLSSGAIAGIVIGSSIALLIIVLILIFLWRKTIRINGQSDAQTTTSGRLSSEVENGGGGNGGTGNERSLVFCGKGESAFDLEELLKASAEVLGKGTFGSTYKVALDMGMTVVVKRLKDVKVSKEEFKEKIESLGMMNHQNLVPINAYYYGRDEKLLLCDYVPMGSLSVHLHGNKDPGRRTPLKWEARAGIALAAARGISYLHSRRPPTSHGNIKPSNILLNRSHAACVSDFGLVQIASQSSTPNHLASYRAPEVTDPRKVSLKADVYSFGMVMLELLSGKAPNSPMLNDDGIDLPRWVHSKIEEKQTAEVFDEELLEYKNGLDEMVQLLHLALLCTAPHPDSRPSMAKVTSRIDEIYQSILLKEQEAGNDKFYDVDSSVSQQFYSADSIMVPSSI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38157274 38159684 - Lag0029359.1 Lac8g1972 617806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1972 629 Gene3D Ribonuclease Inhibitor 31 140 IPR032675 -
Lac8g1972 629 PANTHER OS05G0588300 PROTEIN 15 597 IPR050994 -
Lac8g1972 629 Pfam Leucine Rich Repeat 189 209 IPR001611 GO:0005515(InterPro)
Lac8g1972 629 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Lac8g1972 629 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Lac8g1972 629 FunFam Probable inactive receptor kinase RLK902 29 186 - -
Lac8g1972 629 MobiDBLite consensus disorder prediction 274 298 - -
Lac8g1972 629 SMART LRR_typ_2 93 116 IPR003591 -
Lac8g1972 629 SMART LRR_typ_2 165 187 IPR003591 -
Lac8g1972 629 SMART LRR_typ_2 117 141 IPR003591 -
Lac8g1972 629 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Lac8g1972 629 Gene3D Transferase(Phosphotransferase) domain 1 395 600 - -
Lac8g1972 629 SUPERFAMILY L domain-like 47 210 - -
Lac8g1972 629 SUPERFAMILY Protein kinase-like (PK-like) 324 585 IPR011009 -
Lac8g1972 629 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Lac8g1972 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 395 600 - -
Lac8g1972 629 Pfam Protein tyrosine and serine/threonine kinase 324 586 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g1972 629 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524(InterPro)
Lac8g1972 629 MobiDBLite consensus disorder prediction 274 296 - -
Lac8g1972 629 Gene3D Phosphorylase Kinase; domain 1 297 394 - -
Lac8g1972 629 Pfam Leucine rich repeat 91 129 IPR001611 GO:0005515(InterPro)
Lac8g1972 629 ProSiteProfiles Protein kinase domain profile. 320 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g1972 629 FunFam pollen receptor-like kinase 1 292 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0217 Lac-Chr11:2147002 Lac8g1972 Lac-Chr8:38157274 2.30E-129 dispersed
Lac6g2971 Lac-Chr6:47280640 Lac8g1972 Lac-Chr8:38157274 9.70E-97 dispersed
Lac6g3114 Lac-Chr6:48530513 Lac8g1972 Lac-Chr8:38157274 7.20E-58 dispersed
Lac8g1972 Lac-Chr8:38157274 Lac9g2320 Lac-Chr9:42535624 1.10E-84 dispersed
Lac8g1972 Lac-Chr8:38157274 Lac10g0300 Lac-Chr10:2302278 3.50E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86377 PF07714 PK_Tyr_Ser-Thr 1.10E-32 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1972 - - - 0.0