Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g1978 ATGGTTCTCTCCAAGACTGCTTCTCAGACAGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATCCCTAAGGAGGCTGCGTTCCAGATCATCAACGATGAACTCATGCTCGATGGAAATCCTAGGCTGAATTTGGCCTCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGACAAACTCATCATGGCTGCCATTAACAAGAACTATGTGGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGTGAGTCTGAGACGGCGGTGGGAGTTGGAACGGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGCTTGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGAAGGTTACTATGTGATGGATCCAGAGAAAGCTGTGGAATTGGTTGACGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCGCTTAAATGATCTCTTGGTCGAAAAGAACAAGGAAACTGGATGGGACACTCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTTGAGTGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGGCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTCATCTGGAGGAACAAGGAAGACTTGCCTGATGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAGCCCACTTTCACCCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTCCTCAAGGAAGGACTCGAAAAAACAGGGCGCTTCAACATTGTGTCGAAGGACGATGGAGTTCCACTAGTGGCCTTCTCCTTGAAAGACAACACTCGCCACACAGAGTTTGAAGTCTCAGAAATGCTGAGGAGATTCGGCTGGATTGTGCCAGCTTACACCATGCCTCCAGATGCACAACACATTACAGTCCTAAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTGGTGGCAGATATTGAGAAAGTACTGCACGAGCTCGACAGCCTCCCGTCGAAGGCCGATATGAAGACAATGGTGGCTAGAGAAGAGGCACAGCACAACCCGAAGAAGAGCGCACTCGAGACACAGAGGGAGATCACAACTGCTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAG 1488 47.78 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGLPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLEKTGRFNIVSKDDGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVLHELDSLPSKADMKTMVAREEAQHNPKKSALETQREITTAWRKFVMEKKKTNGVC 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38193435 38201202 - Lag0029365.1 Lac8g1978 617812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g1978 495 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lac8g1978 495 CDD DOPA_deC_like 59 439 - -
Lac8g1978 495 Gene3D - 1 65 - -
Lac8g1978 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lac8g1978 495 FunFam Glutamate decarboxylase 361 448 - -
Lac8g1978 495 PANTHER GLUTAMATE DECARBOXYLASE 1 495 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lac8g1978 495 FunFam Glutamate decarboxylase 66 360 - -
Lac8g1978 495 FunFam Glutamate decarboxylase 1 65 - -
Lac8g1978 495 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Lac8g1978 495 Gene3D - 66 360 IPR015421 -
Lac8g1978 495 Gene3D - 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0021 Lac-Chr10:292189 Lac8g1978 Lac-Chr8:38193435 1.40E-228 dispersed
Lac8g1978 Lac-Chr8:38193435 Lac8g2187 Lac-Chr8:40149625 4.40E-243 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g1978 K01580 - csv:101216119 959.903