Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2009 | ATGAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTAAGGAGAATGATTCTCCCAAAGAAATCAGCTGAAACTCACCTCCCAGCTTTGGACTCTAAAGAAGGGATCATCATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTACGTACTTGAAAACACTGGGGACTTTGTCAATACCCATGGCTTACATCTGGGAGATTTCATCATGGTTTACCAAGATTGTGAAGATCAAAATTATGTCATTCAAGCAAAAAAGGCTTGCGATCAAGAAATATATTCGGACGTCGTATCGGAGAACGTCGTGATCAACGACATCGTCTTTGATGACTACGATGCTAGCAAAGCTGCCAGCGCCATATACGTGCCTAGTCCAACAATGGAAGATCCTGTCTCGTCGTTCATCTACGACACGAGTTCTGCCTTTGACAACGACTCGCCCTTCGACTTTATGAGTAGCTCAATGACCAACTACTCGAGAATGGGAGCTCTCGAAGGCTTCGGATCGGTCGAGAATTTGTCTCTTGACGACTTCTACTAA | 603 | 43.62 | MRLKFLFQKELKNSDVSSLRRMILPKKSAETHLPALDSKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNTHGLHLGDFIMVYQDCEDQNYVIQAKKACDQEIYSDVVSENVVINDIVFDDYDASKAASAIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSSSMTNYSRMGALEGFGSVENLSLDDFY | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38569571 | 38570759 | + | Lag0029396.1 | Lac8g2009 | 617843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2009 | 200 | FunFam | B3 domain-containing transcription factor FUS3 | 3 | 126 | - | - | |
Lac8g2009 | 200 | Gene3D | - | 3 | 121 | IPR015300 | - | |
Lac8g2009 | 200 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 5 | 114 | IPR044800 | GO:0003700(InterPro) | |
Lac8g2009 | 200 | Pfam | B3 DNA binding domain | 7 | 105 | IPR003340 | GO:0003677(InterPro) | |
Lac8g2009 | 200 | SMART | B3_2 | 7 | 109 | IPR003340 | GO:0003677(InterPro) | |
Lac8g2009 | 200 | CDD | B3_DNA | 5 | 107 | IPR003340 | GO:0003677(InterPro) | |
Lac8g2009 | 200 | ProSiteProfiles | B3 DNA-binding domain profile. | 7 | 109 | IPR003340 | GO:0003677(InterPro) | |
Lac8g2009 | 200 | SUPERFAMILY | DNA-binding pseudobarrel domain | 5 | 105 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2024 | Lac-Chr4:39820498 | Lac8g2009 | Lac-Chr8:38569571 | 2.70E-31 | dispersed | |
Lac7g2915 | Lac-Chr7:48186570 | Lac8g2009 | Lac-Chr8:38569571 | 4.30E-15 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24304 | PF02362 | B3 | 5.50E-17 | CL0405 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2009 | K09287 | - | csv:101222512 | 362.844 |