Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2009 ATGAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTAAGGAGAATGATTCTCCCAAAGAAATCAGCTGAAACTCACCTCCCAGCTTTGGACTCTAAAGAAGGGATCATCATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTACGTACTTGAAAACACTGGGGACTTTGTCAATACCCATGGCTTACATCTGGGAGATTTCATCATGGTTTACCAAGATTGTGAAGATCAAAATTATGTCATTCAAGCAAAAAAGGCTTGCGATCAAGAAATATATTCGGACGTCGTATCGGAGAACGTCGTGATCAACGACATCGTCTTTGATGACTACGATGCTAGCAAAGCTGCCAGCGCCATATACGTGCCTAGTCCAACAATGGAAGATCCTGTCTCGTCGTTCATCTACGACACGAGTTCTGCCTTTGACAACGACTCGCCCTTCGACTTTATGAGTAGCTCAATGACCAACTACTCGAGAATGGGAGCTCTCGAAGGCTTCGGATCGGTCGAGAATTTGTCTCTTGACGACTTCTACTAA 603 43.62 MRLKFLFQKELKNSDVSSLRRMILPKKSAETHLPALDSKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNTHGLHLGDFIMVYQDCEDQNYVIQAKKACDQEIYSDVVSENVVINDIVFDDYDASKAASAIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSSSMTNYSRMGALEGFGSVENLSLDDFY 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38569571 38570759 + Lag0029396.1 Lac8g2009 617843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2009 200 FunFam B3 domain-containing transcription factor FUS3 3 126 - -
Lac8g2009 200 Gene3D - 3 121 IPR015300 -
Lac8g2009 200 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 114 IPR044800 GO:0003700(InterPro)
Lac8g2009 200 Pfam B3 DNA binding domain 7 105 IPR003340 GO:0003677(InterPro)
Lac8g2009 200 SMART B3_2 7 109 IPR003340 GO:0003677(InterPro)
Lac8g2009 200 CDD B3_DNA 5 107 IPR003340 GO:0003677(InterPro)
Lac8g2009 200 ProSiteProfiles B3 DNA-binding domain profile. 7 109 IPR003340 GO:0003677(InterPro)
Lac8g2009 200 SUPERFAMILY DNA-binding pseudobarrel domain 5 105 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2024 Lac-Chr4:39820498 Lac8g2009 Lac-Chr8:38569571 2.70E-31 dispersed
Lac7g2915 Lac-Chr7:48186570 Lac8g2009 Lac-Chr8:38569571 4.30E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24304 PF02362 B3 5.50E-17 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2009 K09287 - csv:101222512 362.844