Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2013 | ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCCGAGCTCCGCTTCTTCCCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAACATTCCTAATCTCCGCGTTGGAACGCTGGATTCGCTCCTTTCCCTCAGCGACGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCCCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCGGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTTCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACACTTCTTGTGATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTATCTATGAAACACTGACTAGTTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGCGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTTATTTCCTGGATGCACTTTTGTGCAGTACGTGTTTTTGCTGAGAGTATCCTGAGATACGGTTTACCACCATCCTTCTTGGCATCTGTTTTAGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGCGATGGCTGGTCTCGGAGGAGATTCTGATGCACATCCATATGTCTCCTTCACAATCAATCTTGCCTAA | 1131 | 44.21 | MASRYWMVSLPVPSSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSIYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGAMAGLGGDSDAHPYVSFTINLA | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 38592234 | 38597296 | + | Lag0029400.1 | Lac8g2013 | 617847 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2013 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 375 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) | |
| Lac8g2013 | 376 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 2 | 375 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| Lac8g2013 | 376 | Pfam | V-ATPase subunit C | 5 | 369 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac8g2013 | 376 | CDD | V-ATPase_C | 5 | 373 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac8g2013 | 376 | Gene3D | - | 163 | 251 | - | - | |
| Lac8g2013 | 376 | Gene3D | - | 41 | 312 | - | - | |
| Lac8g2013 | 376 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
| Lac8g2013 | 376 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2013 | K02148 | - | csv:101221574 | 707.983 |