Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2023 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCTCAACACAGACATACCCAACAACAAACAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCTTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGCGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTCGCTGTTCGTTCAACAGCAATCGATTGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTCCCGGGGCATCTGAATTTGCTCGCTTCTTTATCGGGTGGACCGGGAAGTTCCGGCCGGAGAGATAACGACCACCGTTGA 795 62.14 MSASDAATNNAAIIDHPQHRHTQQQTNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAAGGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38700712 38701506 + Lag0029410.1 Lac8g2023 617857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2023 264 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
Lac8g2023 264 MobiDBLite consensus disorder prediction 1 52 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 1 36 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 107 130 - -
Lac8g2023 264 Pfam TCP family transcription factor 42 118 IPR017887 -
Lac8g2023 264 MobiDBLite consensus disorder prediction 107 131 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 145 164 - -
Lac8g2023 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 151 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2023 K16221 - - csv:101214586 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2715 Lac-Chr10:41590663 Lac8g2023 Lac-Chr8:38700712 1.30E-110 dispersed
Lac13g0918 Lac-Chr13:7574322 Lac8g2023 Lac-Chr8:38700712 7.60E-77 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g2023 Lac-Chr8:38700712 1.30E-26 dispersed
Lac8g0084 Lac-Chr8:1165814 Lac8g2023 Lac-Chr8:38700712 1.50E-26 dispersed
Lac8g2023 Lac-Chr8:38700712 Lac9g2606 Lac-Chr9:44578866 6.60E-20 dispersed
Lac8g2023 Lac-Chr8:38700712 Lac8g2693 Lac-Chr8:44409848 1.60E-111 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24306 PF03634 TCP 1.40E-31 No_clan Lac TF