Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2023 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCTCAACACAGACATACCCAACAACAAACAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCTTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGCGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTCGCTGTTCGTTCAACAGCAATCGATTGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTCCCGGGGCATCTGAATTTGCTCGCTTCTTTATCGGGTGGACCGGGAAGTTCCGGCCGGAGAGATAACGACCACCGTTGA 795 62.14 MSASDAATNNAAIIDHPQHRHTQQQTNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAAGGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38700712 38701506 + Lag0029410.1 Lac8g2023 617857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2023 264 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
Lac8g2023 264 MobiDBLite consensus disorder prediction 1 52 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 1 36 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 107 130 - -
Lac8g2023 264 Pfam TCP family transcription factor 42 118 IPR017887 -
Lac8g2023 264 MobiDBLite consensus disorder prediction 107 131 - -
Lac8g2023 264 MobiDBLite consensus disorder prediction 145 164 - -
Lac8g2023 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 151 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2715 Lac-Chr10:41590663 Lac8g2023 Lac-Chr8:38700712 1.30E-110 dispersed
Lac13g0918 Lac-Chr13:7574322 Lac8g2023 Lac-Chr8:38700712 7.60E-77 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g2023 Lac-Chr8:38700712 1.30E-26 dispersed
Lac8g0084 Lac-Chr8:1165814 Lac8g2023 Lac-Chr8:38700712 1.50E-26 dispersed
Lac8g2023 Lac-Chr8:38700712 Lac9g2606 Lac-Chr9:44578866 6.60E-20 dispersed
Lac8g2023 Lac-Chr8:38700712 Lac8g2693 Lac-Chr8:44409848 1.60E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24306 PF03634 TCP 1.40E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2023 K16221 - csv:101214586 359.377