Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2054 | ATGTCTTCTTCTCTTTCATGGTTCTTGTTCTTTTCCCTCTCGTTTACTTTTTCCGGTACGGGCGGCTCGGTTTCCGATGATGCAATGTCGCTCCTCAGGTTTAAGGACTCGATTTCGCTCGACGGCTCTGATCTTCTTCGTGACTGGAATTTTTCGGTTTCTCACTGTAATTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAACATCAGTGGAAGTGGTGGTGTTATGGCGACAGGTTCTATTCTGGCCGGGACGTTGAATCCGGCGATTGGAAATCTTTCTGAGCTTCGCGTTTTGTCGCTTCCGAATAATCTGATCTACGGGGAGATTCCGAGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTACTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAAACAGATAAGTTTACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATACCGAGTAATTTGATCGGTTCGACGAAACTAGAAGCAATTGATTTGTCGTACAATCAACTATCTGGTAGGATTCAAGTTGTTGATAATAGATGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTGATAACATTCCGGCGGAGATTAGACAATGTTGGAAACTGAAGACTCTGTTGCTGGATAGTAACATATTAGAGGGTCAAATTCCGGCTGAGATTGGCCAAATTTCAGAGCTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGAGCTCAGTAATTGCCGGAAGTTGTCACAGATCGTGTTGACGAATTTGAATGATATCAATCACGACGGCGATAGTTTAAGGGGGGAATTCAACGCTTTCAATGGAGGTATCCCTTCTGATTTGTTATTGCTTCCAAGTCTGCAAGTTTTTTGGGCGCCGAGAGGAAATTTTAATGGCAAATTGCCGAATAATTGGGGTTCTTCATGCTCGCTTAGAGTTCTAAATTTAGGGCAAAATTACATCACTGGTACCATACCCGAATCGATTGGGAAATGTGCGAACCTAACTTACCTGGATTTGTCTTCAAACAAGTTACAAGGTAACCTCCCTATGCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTCCTTTCGAGATTTGAGAAAGACAGTTTCTGTAGGAACAAGATCCCACATGAACCAGTTCCTAATTTCTTAGATGAGGAAGATGATTGGAATTCTTTCTTCAATTTTCCTGTTTGGGATTTCCTAAGATTGAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCATTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCACAAGTTCTCGTACAAACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGAGCGTTTCAGTTAACTTGAGTTCAAACTCAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATGGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTGGAATTGGCGACTTGCAGATGCTTCTTCGTCTTGACTTGAGAGAGAACAGATTGTCTGGAGTTTTACCATATCAGTTGGGGAAGTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTCACTGGAGAGATTCCATCTCGACTCAGTCAATTGACTTCTCTCACGAGTTTAGATCTTTCTGGAAACGAATTTACAGGAGTTATCCCTGAAAACTTTTCATATGCTTCAAGACTTGAGATTTTGTTGCTTGATCATAACAGGTTAACAGGGGAAATACCAGTATCTTTCTCCGCCCTTTCTCATCTCATTAAGTTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTTTAGTGGGAATAAGTTTCTGCATCCATGCCCGGATTCATACTCCGAGTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGAGAAGTGGAAGAGACGAAGAAAGTTCATGTCCATGATAATTGCTGTGGCTGCTTCCTCAACTCTAATTTGCATACTCCTAATGATAGCTGTTTTCATCATTGTCAAGAAAAAGCTTGGTAGACAAAATAGTTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCATCCGATCTGAATTATGATAATGTGGTCCGAGCTACCGAAAATTTTAGCCTCCGCTACCTAATCGGTAGTGGTGGCTTTGGGTCAACATACAAGGCTGAACTGCCTTCAGGTTTCCTGGTTGCTGTAAAAAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGATGCAGAAATTCGAACATTGGGAAGAATACGACACAAAAACCTGGTAACTCTTCTTGGGTACTATGTCGGAGAGGCTGAAATGTTCTTAGTTTACAACTACCTTTCTGGTGGGAACCTAGAGACCTTCATTCATGAAAAATCTTGCAAACACGTAAAGCACTCGGTGATCCACAAGATCGCTTGGGACATAGCGAGGGCTCTTGCATACCTTCACTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTTGATGAAGAGCATAACATTTACATATCAGATTTTGGGTTAGCCAGGCTTCTTGAGGTTTCGGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACCACTTGCAGGGTCTCAGACAAGGCCGATGTTTATAGCTTCGGAGTTGTGCTCTTAGAGTTGCTTTCGGGAAAAAGGTCGCTTGATCGATCCTTTTCCGACTTTGGTAACGGGTTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCAAAGGAACACTTACTTGGAATGTTAAAGCTCGCATCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA | 3132 | 42.56 | MSSSLSWFLFFSLSFTFSGTGGSVSDDAMSLLRFKDSISLDGSDLLRDWNFSVSHCNWFGVTCDGVTGRVVALNISGSGGVMATGSILAGTLNPAIGNLSELRVLSLPNNLIYGEIPRSVGKLQSLEVLELQGNNFSGEIPKQISLLRSLRLLNLSDNSFSGSIPSNLIGSTKLEAIDLSYNQLSGRIQVVDNRCGVLNHLRLSHNFLTDNIPAEIRQCWKLKTLLLDSNILEGQIPAEIGQISELRILDVSRNSLTDSIPKELSNCRKLSQIVLTNLNDINHDGDSLRGEFNAFNGGIPSDLLLLPSLQVFWAPRGNFNGKLPNNWGSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPMQLRVSCMAYFNVSQNKISGVLSRFEKDSFCRNKIPHEPVPNFLDEEDDWNSFFNFPVWDFLRLNDNLIIAHDFSWNRFSGSLTSFKVGEELLANGHKFSYKLLLNSNQFNGSLPIDLVSNCNDMKSVSVNLSSNSVSGEISDAFFLHCRQMMEFEAASNELDNSIGPGIGDLQMLLRLDLRENRLSGVLPYQLGKLQSLKWMLLGGNNFTGEIPSRLSQLTSLTSLDLSGNEFTGVIPENFSYASRLEILLLDHNRLTGEIPVSFSALSHLIKLDVSFNNLSGHIPHLQHMIDCIYFSGNKFLHPCPDSYSESPAGLPVPLDVEKWKRRRKFMSMIIAVAASSTLICILLMIAVFIIVKKKLGRQNSLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGSGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIAWDIARALAYLHYSCDPRIVHRDIKPSNILLDEEHNIYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL | 1043 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39039156 | 39042287 | + | Lag0029441.1 | Lac8g2054 | 617888 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2054 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 442 | 686 | - | - | |
Lac8g2054 | 1043 | SUPERFAMILY | L domain-like | 25 | 279 | - | - | |
Lac8g2054 | 1043 | Gene3D | Ribonuclease Inhibitor | 193 | 285 | IPR032675 | - | |
Lac8g2054 | 1043 | SMART | LRR_typ_2 | 243 | 267 | IPR003591 | - | |
Lac8g2054 | 1043 | SMART | LRR_typ_2 | 593 | 616 | IPR003591 | - | |
Lac8g2054 | 1043 | SMART | LRR_typ_2 | 147 | 171 | IPR003591 | - | |
Lac8g2054 | 1043 | SMART | LRR_typ_2 | 99 | 123 | IPR003591 | - | |
Lac8g2054 | 1043 | SMART | LRR_typ_2 | 545 | 568 | IPR003591 | - | |
Lac8g2054 | 1043 | Gene3D | Ribonuclease Inhibitor | 286 | 410 | IPR032675 | - | |
Lac8g2054 | 1043 | SUPERFAMILY | L domain-like | 200 | 679 | - | - | |
Lac8g2054 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 732 | 844 | - | - | |
Lac8g2054 | 1043 | Gene3D | Phosphorylase Kinase; domain 1 | 729 | 844 | - | - | |
Lac8g2054 | 1043 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 290 | 1042 | IPR050647 | - | |
Lac8g2054 | 1043 | SUPERFAMILY | Protein kinase-like (PK-like) | 745 | 1040 | IPR011009 | - | |
Lac8g2054 | 1043 | ProSitePatterns | Protein kinases ATP-binding region signature. | 774 | 796 | IPR017441 | GO:0005524(InterPro) | |
Lac8g2054 | 1043 | CDD | STKc_IRAK | 774 | 1043 | - | - | |
Lac8g2054 | 1043 | Gene3D | Ribonuclease Inhibitor | 411 | 692 | IPR032675 | - | |
Lac8g2054 | 1043 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 889 | 901 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g2054 | 1043 | Pfam | Leucine Rich Repeat | 125 | 145 | IPR001611 | GO:0005515(InterPro) | |
Lac8g2054 | 1043 | Pfam | Leucine Rich Repeat | 246 | 267 | IPR001611 | GO:0005515(InterPro) | |
Lac8g2054 | 1043 | Pfam | Leucine Rich Repeat | 149 | 168 | IPR001611 | GO:0005515(InterPro) | |
Lac8g2054 | 1043 | PRINTS | Leucine-rich repeat signature | 357 | 370 | - | - | |
Lac8g2054 | 1043 | PRINTS | Leucine-rich repeat signature | 593 | 606 | - | - | |
Lac8g2054 | 1043 | Pfam | Leucine rich repeat | 332 | 367 | IPR001611 | GO:0005515(InterPro) | |
Lac8g2054 | 1043 | Pfam | Leucine rich repeat | 595 | 654 | IPR001611 | GO:0005515(InterPro) | |
Lac8g2054 | 1043 | Pfam | Protein kinase domain | 773 | 972 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g2054 | 1043 | ProSiteProfiles | Protein kinase domain profile. | 768 | 1043 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g2054 | 1043 | Gene3D | Ribonuclease Inhibitor | 26 | 192 | IPR032675 | - | |
Lac8g2054 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase RPK2 | 845 | 1043 | - | - | |
Lac8g2054 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 193 | 283 | - | - | |
Lac8g2054 | 1043 | Gene3D | Transferase(Phosphotransferase) domain 1 | 845 | 1043 | - | - | |
Lac8g2054 | 1043 | SMART | serkin_6 | 768 | 1043 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g2054 | 1043 | Pfam | Leucine rich repeat N-terminal domain | 25 | 64 | IPR013210 | - | |
Lac8g2054 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 286 | 371 | - | - | |
Lac8g2054 | 1043 | FunFam | Leucine-rich repeat receptor-like protein kinase | 24 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac8g2054 | Lac-Chr8:39039156 | Lac5g2914 | Lac-Chr5:47292775 | 5.20E-60 | dispersed | |
Lac8g2054 | Lac-Chr8:39039156 | Lac4g0504 | Lac-Chr4:11664690 | 3.00E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86379 | PF00069 | Pkinase | 3.00E-45 | CL0016 | Lac | PK |
Pathway information
