Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2054 ATGTCTTCTTCTCTTTCATGGTTCTTGTTCTTTTCCCTCTCGTTTACTTTTTCCGGTACGGGCGGCTCGGTTTCCGATGATGCAATGTCGCTCCTCAGGTTTAAGGACTCGATTTCGCTCGACGGCTCTGATCTTCTTCGTGACTGGAATTTTTCGGTTTCTCACTGTAATTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAACATCAGTGGAAGTGGTGGTGTTATGGCGACAGGTTCTATTCTGGCCGGGACGTTGAATCCGGCGATTGGAAATCTTTCTGAGCTTCGCGTTTTGTCGCTTCCGAATAATCTGATCTACGGGGAGATTCCGAGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTACTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAAACAGATAAGTTTACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATACCGAGTAATTTGATCGGTTCGACGAAACTAGAAGCAATTGATTTGTCGTACAATCAACTATCTGGTAGGATTCAAGTTGTTGATAATAGATGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTGATAACATTCCGGCGGAGATTAGACAATGTTGGAAACTGAAGACTCTGTTGCTGGATAGTAACATATTAGAGGGTCAAATTCCGGCTGAGATTGGCCAAATTTCAGAGCTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGAGCTCAGTAATTGCCGGAAGTTGTCACAGATCGTGTTGACGAATTTGAATGATATCAATCACGACGGCGATAGTTTAAGGGGGGAATTCAACGCTTTCAATGGAGGTATCCCTTCTGATTTGTTATTGCTTCCAAGTCTGCAAGTTTTTTGGGCGCCGAGAGGAAATTTTAATGGCAAATTGCCGAATAATTGGGGTTCTTCATGCTCGCTTAGAGTTCTAAATTTAGGGCAAAATTACATCACTGGTACCATACCCGAATCGATTGGGAAATGTGCGAACCTAACTTACCTGGATTTGTCTTCAAACAAGTTACAAGGTAACCTCCCTATGCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTCCTTTCGAGATTTGAGAAAGACAGTTTCTGTAGGAACAAGATCCCACATGAACCAGTTCCTAATTTCTTAGATGAGGAAGATGATTGGAATTCTTTCTTCAATTTTCCTGTTTGGGATTTCCTAAGATTGAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCATTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCACAAGTTCTCGTACAAACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGAGCGTTTCAGTTAACTTGAGTTCAAACTCAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAGATGATGGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTGGAATTGGCGACTTGCAGATGCTTCTTCGTCTTGACTTGAGAGAGAACAGATTGTCTGGAGTTTTACCATATCAGTTGGGGAAGTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTCACTGGAGAGATTCCATCTCGACTCAGTCAATTGACTTCTCTCACGAGTTTAGATCTTTCTGGAAACGAATTTACAGGAGTTATCCCTGAAAACTTTTCATATGCTTCAAGACTTGAGATTTTGTTGCTTGATCATAACAGGTTAACAGGGGAAATACCAGTATCTTTCTCCGCCCTTTCTCATCTCATTAAGTTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTTTAGTGGGAATAAGTTTCTGCATCCATGCCCGGATTCATACTCCGAGTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGAGAAGTGGAAGAGACGAAGAAAGTTCATGTCCATGATAATTGCTGTGGCTGCTTCCTCAACTCTAATTTGCATACTCCTAATGATAGCTGTTTTCATCATTGTCAAGAAAAAGCTTGGTAGACAAAATAGTTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCATCCGATCTGAATTATGATAATGTGGTCCGAGCTACCGAAAATTTTAGCCTCCGCTACCTAATCGGTAGTGGTGGCTTTGGGTCAACATACAAGGCTGAACTGCCTTCAGGTTTCCTGGTTGCTGTAAAAAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGATGCAGAAATTCGAACATTGGGAAGAATACGACACAAAAACCTGGTAACTCTTCTTGGGTACTATGTCGGAGAGGCTGAAATGTTCTTAGTTTACAACTACCTTTCTGGTGGGAACCTAGAGACCTTCATTCATGAAAAATCTTGCAAACACGTAAAGCACTCGGTGATCCACAAGATCGCTTGGGACATAGCGAGGGCTCTTGCATACCTTCACTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTTGATGAAGAGCATAACATTTACATATCAGATTTTGGGTTAGCCAGGCTTCTTGAGGTTTCGGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACCACTTGCAGGGTCTCAGACAAGGCCGATGTTTATAGCTTCGGAGTTGTGCTCTTAGAGTTGCTTTCGGGAAAAAGGTCGCTTGATCGATCCTTTTCCGACTTTGGTAACGGGTTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCAAAGGAACACTTACTTGGAATGTTAAAGCTCGCATCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 42.56 MSSSLSWFLFFSLSFTFSGTGGSVSDDAMSLLRFKDSISLDGSDLLRDWNFSVSHCNWFGVTCDGVTGRVVALNISGSGGVMATGSILAGTLNPAIGNLSELRVLSLPNNLIYGEIPRSVGKLQSLEVLELQGNNFSGEIPKQISLLRSLRLLNLSDNSFSGSIPSNLIGSTKLEAIDLSYNQLSGRIQVVDNRCGVLNHLRLSHNFLTDNIPAEIRQCWKLKTLLLDSNILEGQIPAEIGQISELRILDVSRNSLTDSIPKELSNCRKLSQIVLTNLNDINHDGDSLRGEFNAFNGGIPSDLLLLPSLQVFWAPRGNFNGKLPNNWGSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPMQLRVSCMAYFNVSQNKISGVLSRFEKDSFCRNKIPHEPVPNFLDEEDDWNSFFNFPVWDFLRLNDNLIIAHDFSWNRFSGSLTSFKVGEELLANGHKFSYKLLLNSNQFNGSLPIDLVSNCNDMKSVSVNLSSNSVSGEISDAFFLHCRQMMEFEAASNELDNSIGPGIGDLQMLLRLDLRENRLSGVLPYQLGKLQSLKWMLLGGNNFTGEIPSRLSQLTSLTSLDLSGNEFTGVIPENFSYASRLEILLLDHNRLTGEIPVSFSALSHLIKLDVSFNNLSGHIPHLQHMIDCIYFSGNKFLHPCPDSYSESPAGLPVPLDVEKWKRRRKFMSMIIAVAASSTLICILLMIAVFIIVKKKLGRQNSLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGSGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIAWDIARALAYLHYSCDPRIVHRDIKPSNILLDEEHNIYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 39039156 39042287 + Lag0029441.1 Lac8g2054 617888
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2054 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 442 686 - -
Lac8g2054 1043 SUPERFAMILY L domain-like 25 279 - -
Lac8g2054 1043 Gene3D Ribonuclease Inhibitor 193 285 IPR032675 -
Lac8g2054 1043 SMART LRR_typ_2 243 267 IPR003591 -
Lac8g2054 1043 SMART LRR_typ_2 593 616 IPR003591 -
Lac8g2054 1043 SMART LRR_typ_2 147 171 IPR003591 -
Lac8g2054 1043 SMART LRR_typ_2 99 123 IPR003591 -
Lac8g2054 1043 SMART LRR_typ_2 545 568 IPR003591 -
Lac8g2054 1043 Gene3D Ribonuclease Inhibitor 286 410 IPR032675 -
Lac8g2054 1043 SUPERFAMILY L domain-like 200 679 - -
Lac8g2054 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Lac8g2054 1043 Gene3D Phosphorylase Kinase; domain 1 729 844 - -
Lac8g2054 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 290 1042 IPR050647 -
Lac8g2054 1043 SUPERFAMILY Protein kinase-like (PK-like) 745 1040 IPR011009 -
Lac8g2054 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Lac8g2054 1043 CDD STKc_IRAK 774 1043 - -
Lac8g2054 1043 Gene3D Ribonuclease Inhibitor 411 692 IPR032675 -
Lac8g2054 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2054 1043 Pfam Leucine Rich Repeat 125 145 IPR001611 GO:0005515(InterPro)
Lac8g2054 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Lac8g2054 1043 Pfam Leucine Rich Repeat 149 168 IPR001611 GO:0005515(InterPro)
Lac8g2054 1043 PRINTS Leucine-rich repeat signature 357 370 - -
Lac8g2054 1043 PRINTS Leucine-rich repeat signature 593 606 - -
Lac8g2054 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515(InterPro)
Lac8g2054 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515(InterPro)
Lac8g2054 1043 Pfam Protein kinase domain 773 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2054 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2054 1043 Gene3D Ribonuclease Inhibitor 26 192 IPR032675 -
Lac8g2054 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Lac8g2054 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 283 - -
Lac8g2054 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Lac8g2054 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2054 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Lac8g2054 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 286 371 - -
Lac8g2054 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2054 Lac-Chr8:39039156 Lac5g2914 Lac-Chr5:47292775 5.20E-60 dispersed
Lac8g2054 Lac-Chr8:39039156 Lac4g0504 Lac-Chr4:11664690 3.00E-116 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86379 PF00069 Pkinase 3.00E-45 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2054 - - - 0.0