Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2067 ATGGATACGTTTTGCGATTGTCCTTTAAATGCAATCGTTAGCGCCGCGCATCTCCTTTTTAATTTCTCGAACGAGAAGAAGCCAGGGCAGAATCATGTAAATTTAGGCTATTCATTTCATTCGTCATTTTGTGAATCTATTGCCCCATTCTTTCATGATTTGTGTGCACGTTATTTGAGGCTGGAGATGACTACCCAGCAGCAGAATTCTGATTCAAATGCCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAAAACTGGAACTGGAAAAAGGATCAACAGCTCTCTGGCCCTCAAAAAAGATTGGAAGATCTGTTGCATCAGTCTGGTAATAAGTATTGTGCAGATTGTGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTCTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATACTTTGATAAGCATGGGCGGAAACATAAATGTAAACAAGAAGTATGAAGCCGGCATCATAGATATGAATAGAAAACCAAGACCAGATTCCTGCATAGAGGAGCGCTTTGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAATCATAATTCTTGTGATATCAACTCATTTAGTAAAAGGATTTCATCATGCTCTCAAAGTAACTCTTCAAGCAAGAACGGTAACCAGGACAAAAGGCACTATGACAAACAAGCTACTAGGCATCGTATTGGGCATGCATTTCGCAATAGCCGGGGAAGAAGAGATAGTGAACACAAGTGTTTTGACAAGGGCTTTCCTTCGGTTGCAAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGGTTGGTTAAGGTCAATGTGGTTAGAGGCATGAATCTAGCTGTCCGAGACGTGGTGACCAGCGATCCCTATGTAATTCTCGTGTTGGGTCACCAATCGGTGAGGACTCGCGTCATAAAGAACAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCGATTCCCGAGCACATCCCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCTACTGATGACTTTATGGGTGAGGCCGAAATTGACATTCAACCATTGGTCGCTGCCACCAAGGCCTATGAGAAGTCGACAATTGATGAATCGATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACATTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAAGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAAATTGAGCTAGAATGCATTCCTCTCACACAATAG 1425 41.89 MDTFCDCPLNAIVSAAHLLFNFSNEKKPGQNHVNLGYSFHSSFCESIAPFFHDLCARYLRLEMTTQQQNSDSNAVSGACLFDLLFPDSEMQGWDWSRMPSDSETQNWNWKKDQQLSGPQKRLEDLLHQSGNKYCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLISMGGNINVNKKYEAGIIDMNRKPRPDSCIEERFDFIRRKYELLQFYNANNHNSCDINSFSKRISSCSQSNSSSKNGNQDKRHYDKQATRHRIGHAFRNSRGRRDSEHKCFDKGFPSVARQTSAGMVEFVGLVKVNVVRGMNLAVRDVVTSDPYVILVLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39143231 39153140 - Lag0029454.1 Lac8g2067 617901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2067 474 MobiDBLite consensus disorder prediction 255 295 - -
Lac8g2067 474 SMART arf_gap_3 119 242 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 Gene3D C2 domain 317 471 IPR035892 -
Lac8g2067 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 119 241 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 108 474 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lac8g2067 474 SMART C2_3c 319 414 IPR000008 -
Lac8g2067 474 CDD C2_ArfGAP 317 461 - -
Lac8g2067 474 ProSiteProfiles C2 domain profile. 299 416 IPR000008 -
Lac8g2067 474 Pfam C2 domain 319 407 IPR000008 -
Lac8g2067 474 MobiDBLite consensus disorder prediction 265 279 - -
Lac8g2067 474 CDD ArfGap 122 228 - -
Lac8g2067 474 Gene3D Arf GTPase activating protein 100 242 IPR038508 -
Lac8g2067 474 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 316 474 - -
Lac8g2067 474 SUPERFAMILY ArfGap/RecO-like zinc finger 119 235 IPR037278 -
Lac8g2067 474 Pfam Putative GTPase activating protein for Arf 120 235 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 315 409 IPR035892 -
Lac8g2067 474 PRINTS HIV Rev interacting protein signature 150 167 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 PRINTS HIV Rev interacting protein signature 171 192 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 PRINTS HIV Rev interacting protein signature 131 150 IPR001164 GO:0005096(InterPro)
Lac8g2067 474 FunFam stromal membrane-associated protein 1 isoform X1 103 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0232 Lac-Chr5:2073588 Lac8g2067 Lac-Chr8:39143231 5.20E-10 dispersed
Lac8g1626 Lac-Chr8:34247575 Lac8g2067 Lac-Chr8:39143231 1.10E-28 dispersed
Lac8g2067 Lac-Chr8:39143231 Lac1g3587 Lac-Chr1:55122436 1.40E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2067 K12486 - csv:101215531 730.709